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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002417

染色体: Chr02 坐标: 42158821-42170695 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002417
名称SmilChr02G002417
描述putative receptor-like protein kinase At3g47110
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向42158821 - 42170695 / -

ID 对照

NCBI Gene IDLOC131013521
GeneID131013521
locus_tag-
NCBI NameLOC131013521
原始查询SmilChr02G002417

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative receptor-like protein kinase At3g47110
产物putative receptor-like protein kinase At3g47110
ArabidopsisAT3G47570 (AT3G47570)
Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911]
identity=34.8; qcov=0.988; evalue=1.72e-130; confidence=low
RiceOs11g0694850
-
identity=39.4; qcov=0.939; evalue=9.5e-162; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131013521

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057797612.1
2 Nucleus 细胞核 0.00000 XP_057797612.1
3 Chromosome 染色体 0.00000 XP_057797612.1
4 Centromere 着丝粒 0.00000 XP_057797612.1
5 Chromatin 染色质 0.00000 XP_057797612.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:42159724 G A EMS_canonical_SNV CDS_variant 2 C8,D9
Chr2:42159756 C T EMS_canonical_SNV CDS_variant 1 B62
Chr2:42159769 C T EMS_canonical_SNV stop_gained 4 B106,B48,B73,B89
Chr2:42159769 C T EMS_canonical_SNV CDS_variant 4 B106,B48,B73,B89
Chr2:42159859 G A EMS_canonical_SNV CDS_variant 1 C82
Chr2:42160015 G A EMS_canonical_SNV CDS_variant 1 C40
Chr2:42160044 C T EMS_canonical_SNV CDS_variant 1 C40
Chr2:42160051 C T EMS_canonical_SNV CDS_variant 1 C10
Chr2:42160053 C T EMS_canonical_SNV CDS_variant 1 C16
Chr2:42160388 C T EMS_canonical_SNV CDS_variant 1 B3
Chr2:42160420 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:42160859 G A EMS_canonical_SNV stop_gained 5 A9,B114,B69,B70,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797612.1
1127 aa
N
1
564
1127
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 30-67 aa PF23598 LRR_14 85-272 aa PF00560 LRR_1 97-118 aa PF13855 LRR_8 143-203 aa PF00560 LRR_1 144-166 aa PF00560 LRR_1 168-190 aa PF00560 LRR_1 192-214 aa PF13855 LRR_8 192-252 aa PF00560 LRR_1 313-335 aa PF00560 LRR_1 338-358 aa PF00560 LRR_1 412-433 aa PF00560 LRR_1 435-457 aa PF13855 LRR_8 537-596 aa PF00560 LRR_1 561-583 aa PF00560 LRR_1 585-606 aa PF00560 LRR_1 609-631 aa PF23598 LRR_14 628-739 aa PF00560 LRR_1 681-703 aa PF13855 LRR_8 681-740 aa PF00560 LRR_1 705-727 aa PF00069 Pkinase 846-1116 aa PF07714 PK_Tyr_Ser-Thr 849-1115 aa
XP_057797613.1
1127 aa
N
1
564
1127
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 30-67 aa PF23598 LRR_14 85-272 aa PF00560 LRR_1 97-118 aa PF13855 LRR_8 143-203 aa PF00560 LRR_1 144-166 aa PF00560 LRR_1 168-190 aa PF00560 LRR_1 192-214 aa PF13855 LRR_8 192-252 aa PF00560 LRR_1 313-335 aa PF00560 LRR_1 338-358 aa PF00560 LRR_1 412-433 aa PF00560 LRR_1 435-457 aa PF13855 LRR_8 537-596 aa PF00560 LRR_1 561-583 aa PF00560 LRR_1 585-606 aa PF00560 LRR_1 609-631 aa PF23598 LRR_14 628-739 aa PF00560 LRR_1 681-703 aa PF13855 LRR_8 681-740 aa PF00560 LRR_1 705-727 aa PF00069 Pkinase 846-1116 aa PF07714 PK_Tyr_Ser-Thr 849-1115 aa
XP_057797614.1
757 aa
N
1
378
757
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 30-67 aa PF23598 LRR_14 85-251 aa PF00560 LRR_1 97-118 aa PF13855 LRR_8 143-203 aa PF00560 LRR_1 144-166 aa PF00560 LRR_1 168-190 aa PF00560 LRR_1 192-214 aa PF13855 LRR_8 192-252 aa PF00560 LRR_1 313-335 aa PF00069 Pkinase 476-746 aa PF07714 PK_Tyr_Ser-Thr 479-745 aa
XP_057797615.1
757 aa
N
1
378
757
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 30-67 aa PF23598 LRR_14 85-251 aa PF00560 LRR_1 97-118 aa PF13855 LRR_8 143-203 aa PF00560 LRR_1 144-166 aa PF00560 LRR_1 168-190 aa PF00560 LRR_1 192-214 aa PF13855 LRR_8 192-252 aa PF00560 LRR_1 313-335 aa PF00069 Pkinase 476-746 aa PF07714 PK_Tyr_Ser-Thr 479-745 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797612.1 Pfam PF08263 LRRNT_2 Family 30 67 1.3e-09 38.9 Leucine rich repeat N-terminal domain
XP_057797612.1 Pfam PF23598 LRR_14 Repeat 85 272 1.3e-45 156.5 Leucine-rich repeat region
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 97 118 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF13855 LRR_8 Repeat 143 203 2.7e-47 159.1 Leucine rich repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 144 166 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 168 190 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 192 214 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF13855 LRR_8 Repeat 192 252 2.7e-47 159.1 Leucine rich repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 313 335 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 338 358 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 412 433 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 435 457 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF13855 LRR_8 Repeat 537 596 2.7e-47 159.1 Leucine rich repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 561 583 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 585 606 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 609 631 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF23598 LRR_14 Repeat 628 739 1.3e-45 156.5 Leucine-rich repeat region
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 681 703 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF13855 LRR_8 Repeat 681 740 2.7e-47 159.1 Leucine rich repeat
XP_057797612.1 Pfam PF00560 LRR_1 Repeat 705 727 2e-59 185.3 Leucine Rich Repeat
XP_057797612.1 Pfam PF00069 Pkinase Domain 846 1116 6e-43 147.9 Protein kinase domain
XP_057797612.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 849 1115 5.6e-41 141.3 Protein tyrosine and serine/threonine kinase
XP_057797613.1 Pfam PF08263 LRRNT_2 Family 30 67 1.3e-09 38.9 Leucine rich repeat N-terminal domain
XP_057797613.1 Pfam PF23598 LRR_14 Repeat 85 272 1.3e-45 156.5 Leucine-rich repeat region
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 97 118 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF13855 LRR_8 Repeat 143 203 2.7e-47 159.1 Leucine rich repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 144 166 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 168 190 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 192 214 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF13855 LRR_8 Repeat 192 252 2.7e-47 159.1 Leucine rich repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 313 335 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 338 358 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 412 433 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 435 457 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF13855 LRR_8 Repeat 537 596 2.7e-47 159.1 Leucine rich repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 561 583 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 585 606 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 609 631 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF23598 LRR_14 Repeat 628 739 1.3e-45 156.5 Leucine-rich repeat region
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 681 703 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF13855 LRR_8 Repeat 681 740 2.7e-47 159.1 Leucine rich repeat
XP_057797613.1 Pfam PF00560 LRR_1 Repeat 705 727 2e-59 185.3 Leucine Rich Repeat
XP_057797613.1 Pfam PF00069 Pkinase Domain 846 1116 6e-43 147.9 Protein kinase domain
XP_057797613.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 849 1115 5.6e-41 141.3 Protein tyrosine and serine/threonine kinase
XP_057797614.1 Pfam PF08263 LRRNT_2 Family 30 67 8.3e-10 39.5 Leucine rich repeat N-terminal domain
XP_057797614.1 Pfam PF23598 LRR_14 Repeat 85 251 9.8e-22 77.9 Leucine-rich repeat region
XP_057797614.1 Pfam PF00560 LRR_1 Repeat 97 118 1.1e-25 84.9 Leucine Rich Repeat
XP_057797614.1 Pfam PF13855 LRR_8 Repeat 143 203 1e-19 70.7 Leucine rich repeat
XP_057797614.1 Pfam PF00560 LRR_1 Repeat 144 166 1.1e-25 84.9 Leucine Rich Repeat
XP_057797614.1 Pfam PF00560 LRR_1 Repeat 168 190 1.1e-25 84.9 Leucine Rich Repeat
XP_057797614.1 Pfam PF00560 LRR_1 Repeat 192 214 1.1e-25 84.9 Leucine Rich Repeat
XP_057797614.1 Pfam PF13855 LRR_8 Repeat 192 252 1e-19 70.7 Leucine rich repeat
XP_057797614.1 Pfam PF00560 LRR_1 Repeat 313 335 1.1e-25 84.9 Leucine Rich Repeat
XP_057797614.1 Pfam PF00069 Pkinase Domain 476 746 2.7e-43 149.0 Protein kinase domain
XP_057797614.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 479 745 2.4e-41 142.5 Protein tyrosine and serine/threonine kinase
XP_057797615.1 Pfam PF08263 LRRNT_2 Family 30 67 8.3e-10 39.5 Leucine rich repeat N-terminal domain
XP_057797615.1 Pfam PF23598 LRR_14 Repeat 85 251 9.8e-22 77.9 Leucine-rich repeat region
XP_057797615.1 Pfam PF00560 LRR_1 Repeat 97 118 1.1e-25 84.9 Leucine Rich Repeat
XP_057797615.1 Pfam PF13855 LRR_8 Repeat 143 203 1e-19 70.7 Leucine rich repeat
XP_057797615.1 Pfam PF00560 LRR_1 Repeat 144 166 1.1e-25 84.9 Leucine Rich Repeat
XP_057797615.1 Pfam PF00560 LRR_1 Repeat 168 190 1.1e-25 84.9 Leucine Rich Repeat
XP_057797615.1 Pfam PF00560 LRR_1 Repeat 192 214 1.1e-25 84.9 Leucine Rich Repeat
XP_057797615.1 Pfam PF13855 LRR_8 Repeat 192 252 1e-19 70.7 Leucine rich repeat
XP_057797615.1 Pfam PF00560 LRR_1 Repeat 313 335 1.1e-25 84.9 Leucine Rich Repeat
XP_057797615.1 Pfam PF00069 Pkinase Domain 476 746 2.7e-43 149.0 Protein kinase domain
XP_057797615.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 479 745 2.4e-41 142.5 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057941630.1
TAACATATGGTGATACACTTTATTTAGACTTCACCAAGAATGAACAACTATACATTAGTATAGTGGCATTACTATCATATTTACATTTGCAGCCATGGACAAAACTTTCGCTCATCTTTTTGCATTTGCTGTTTTTTTACTATCCTATTCCTCCCCAAAGTCTTTCACAACTGCCAACCTCGCCACTGATCAGTCTTCCCTTCTTTCCCTAAAAACTCACATAATTTCCGACACTTATCTCACAAATTGGAGCAATTCAA...
XM_057941629.1
TAACATATGGTGATACACTTTATTTAGACTTCACCAAGAATGAACAACTATACATTAGTATAGTGGCATTACTATCATATTTACATTTGCAGCCATGGACAAAACTTTCGCTCATCTTTTTGCATTTGCTGTTTTTTTACTATCCTATTCCTCCCCAAAGTCTTTCACAACTGCCAACCTCGCCACTGATCAGTCTTCCCTTCTTTCCCTAAAAACTCACATAATTTCCGACACTTATCTCACAAATTGGAGCAATTCAA...

CDS

4 records

下载 CDS FASTA
LOC131013521
ATGGACAAAACTTTCGCTCATCTTTTTGCATTTGCTGTTTTTTTACTATCCTATTCCTCCCCAAAGTCTTTCACAACTGCCAACCTCGCCACTGATCAGTCTTCCCTTCTTTCCCTAAAAACTCACATAATTTCCGACACTTATCTCACAAATTGGAGCAATTCAAGCTCCGTTTGCAGTTGGATTGGTGTCACATGCAGCACGCGCCACCGCAGAGTCGCCGCGTTAAATATTTCCGACATGGGCCTCTCCGGCAACAT...
LOC131013521
ATGGACAAAACTTTCGCTCATCTTTTTGCATTTGCTGTTTTTTTACTATCCTATTCCTCCCCAAAGTCTTTCACAACTGCCAACCTCGCCACTGATCAGTCTTCCCTTCTTTCCCTAAAAACTCACATAATTTCCGACACTTATCTCACAAATTGGAGCAATTCAAGCTCCGTTTGCAGTTGGATTGGTGTCACATGCAGCACGCGCCACCGCAGAGTCGCCGCGTTAAATATTTCCGACATGGGCCTCTCCGGCAACAT...

Protein

4 records

下载 Protein FASTA
XP_057797612.1
MDKTFAHLFAFAVFLLSYSSPKSFTTANLATDQSSLLSLKTHIISDTYLTNWSNSSSVCSWIGVTCSTRHRRVAALNISDMGLSGNIPPQLGNLSFLVSLDLASNNFSGTLPQELSRLRRLKIMSLSVNNFVGEIPSWLPLLPKLEFISLRGNSFTGSIPKSISNLTNLYHLDFSSNSLDGKIPQELGELQRLQHLVIQSNHLSGIIPSALFNMSSLRRLAFRSNELSGNLPNDLCANLPVIQEIYLGINQLSGQIPSNL...
XP_057797613.1
MDKTFAHLFAFAVFLLSYSSPKSFTTANLATDQSSLLSLKTHIISDTYLTNWSNSSSVCSWIGVTCSTRHRRVAALNISDMGLSGNIPPQLGNLSFLVSLDLASNNFSGTLPQELSRLRRLKIMSLSVNNFVGEIPSWLPLLPKLEFISLRGNSFTGSIPKSISNLTNLYHLDFSSNSLDGKIPQELGELQRLQHLVIQSNHLSGIIPSALFNMSSLRRLAFRSNELSGNLPNDLCANLPVIQEIYLGINQLSGQIPSNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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