Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002424`

染色体: Chr02 坐标: 42215044-42219166 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002424`
名称	SmilChr02G002424
描述	uncharacterized SmilChr02G002424
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42215044 - 42219166 / `+`

ID 对照

NCBI Gene ID	`LOC131013525`
GeneID	`131013525`
locus_tag	`-`
NCBI Name	`LOC131013525`
原始查询	`SmilChr02G002424`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	translation initiation factor [Source:NCBI gene (formerly Entrezgene);Acc:830117]; symbol=AT4G39630; hit=AT4G39630; species=arabidopsis; confidence=high
产物	translation initiation factor [Source:NCBI gene (formerly Entrezgene);Acc:830117]; symbol=AT4G39630; hit=AT4G39630; species=arabidopsis; confidence=high
Arabidopsis	`AT4G39630` (AT4G39630) translation initiation factor [Source:NCBI gene (formerly Entrezgene);Acc:830117] identity=49.8; qcov=0.936; evalue=1.95e-67; confidence=high
Rice	`Os08g0290400` (OJ1034_C08.37-1) - identity=38.2; qcov=0.864; evalue=5.03e-43; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131013525

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797619.1`
2	Chromosome	染色体	1.00000	`XP_057797619.1`
3	Centromere	着丝粒	1.00000	`XP_057797619.1`
4	Spindle	Spindle	0.60000	`XP_057797619.1`
5	Cytoskeleton	细胞骨架	0.20000	`XP_057797619.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42216860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B78,B87
`Chr2:42216883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B132,C49,D2
`Chr2:42216901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:42217646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B132,C49
`Chr2:42217698`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B91
`Chr2:42217698`	`GT`	`G`	1bp_deletion	CDS_variant	1	B91
`Chr2:42217702`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B91
`Chr2:42217702`	`CT`	`C`	1bp_deletion	CDS_variant	1	B91
`Chr2:42217706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,D2
`Chr2:42217738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B132,C49,D2
`Chr2:42217837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr2:42217888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A9,B132

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057941640.1
CAAACAAACTAAAATCCAAACAAATGTAAAACTTAATCCTTTGCACCGCTTATTTCTGGTTTCTCCCTTCTCACTCTAGCATTAACGCAGCTCTCTGTCTCTCTCTCACGTCTCCGGCCACTCTGTGTTGCCGTCGTCGTCGGCCCTCGTCTCCCAATCTCCCTCATCACGTGTCGCCGCCTTCGCTCAGCCCCTGTGGCCCCGATTCGTTCCCCCTTCTCAATTCTTGGCGCCTGCGTCTGCAACAGTTCTATTATACC...

XM_057941643.1
ACAAACTAAAATCCAAACAAATGTAAAACTTAATCCTTTGCACCGCTTATTTCTGGTTTCTCCCTTCTCACTCTAGCATTAACGCAGCTCTCTGTCTCTCTCTCACGTCTCCGGCCACTCTGTGTTGCCGTCGTCGTCGGCCCTCGTCTCCCAATCTCCCTCATCACGTGTCGCCGCCTTCGCTCAGCCCCTGTGGCCCCGATTCGTTCCCCCTTCTCAATTCTTGGCGCCTGCGTCTGCAACAGATAGCGTAGAAGGCT...

CDS

8 records

下载 CDS FASTA

LOC131013525
ATGGCAAAAAAGAGAGGTAGAGCGAAAAAGCAACCGGTCATTGAGGAACAGAATTGTAATGAAGAAGGCGATCCACTGGAAAAGAAAGACGAAGCATTTGACAATAGTGAAGTTGAACGCCAATGTGCTGCAATCAGAGCTCTCCGGGATGTTGAAATCGAACAGTTTGGCACTATGTTGCGGTTACTTCGTTCGTATTTCAGCGAAGACCAGTTGCAGGTTCCTGTTTTGCAGTTTTTTAGGGAAAACCTTCCGAACCT...

Protein

8 records

下载 Protein FASTA

XP_057797619.1
MAKKRGRAKKQPVIEEQNCNEEGDPLEKKDEAFDNSEVERQCAAIRALRDVEIEQFGTMLRLLRSYFSEDQLQVPVLQFFRENLPNLSLEKAEKDGQYEVKWKQKDVDATLDHADERTLHAALLRRLSLAYPDFSAGIPSLGGFEFSNQSVKTSLFAADKLQIRSLVFDEPSDSQMLEPRDDLQTPNVSNNRLSVGITPKTKRLPKCGEMLLSIHGSPLGVFKEDNMETIQGMGLFTNEQYNKHFL

XP_057797620.1
MAKKRGRAKKQPVIEEQNCNEEGDPLEKKDEAFDNSEVERQCAAIRALRDVEIEQFGTMLRLLRSYFSEDQLQVPVLQFFRENLPNLSLEKAEKDGQYEVKWKQKDVDATLDHADERTLHAALLRRLSLAYPDFSAGIPSLGGFEFSNQSVKTSLFAADKLQIRSLVFDEPSDSQMLEPRDDLQTPNVSNNRLSVGITPKTKRLPKCGEMLLSIHGSPLGVFKEDNMETIQGMGLFTNEQYNKHFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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