Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002440`

染色体: Chr02 坐标: 42635989-42642031 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002440`
名称	SmilChr02G002440
描述	protein STICHEL-like 4
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42635989 - 42642031 / `+`

ID 对照

NCBI Gene ID	`LOC131013537`
GeneID	`131013537`
locus_tag	`-`
NCBI Name	`LOC131013537`
原始查询	`SmilChr02G002440`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein STICHEL-like 4
产物	protein STICHEL-like 4
Arabidopsis	`AT4G18820` (AT4G18820) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827616] identity=52.3; qcov=1.05; evalue=0; confidence=high
Rice	`Os05g0529600` - identity=50.2; qcov=0.862; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0009360 (DNA polymerase III complex)
KEGG	-
Pfam	PF00004 (AAA); PF12169 (DNA_pol3_gamma3); PF13177 (DNA_pol3_delta2); PF23007 (DnaA_N-like_STI)
InterPro	-
eggNOG	-
NR	GeneID:131013537

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797638.1`
2	Cytosol	细胞质基质	0.20000	`XP_057797638.1`
3	Chromosome	染色体	0.00000	`XP_057797638.1`
4	Centromere	着丝粒	0.00000	`XP_057797638.1`
5	Chromatin	染色质	0.00000	`XP_057797638.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42636959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,B51
`Chr2:42637090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr2:42637217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B41
`Chr2:42637366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr2:42637435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:42637773`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D10
`Chr2:42637773`	`AT`	`A`	1bp_deletion	CDS_variant	1	D10
`Chr2:42637775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:42637883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:42638123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B124,B22,C25
`Chr2:42638448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C46,C7
`Chr2:42638620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B138,B25,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797638.1

1143 aa

572

1143

DNA_pol3_delta2

AAA

DNA_pol3_gamma3

DnaA_N-like_STI

PF13177 DNA_pol3_delta2 440-599 aa PF00004 AAA 460-596 aa PF12169 DNA_pol3_gamma3 653-775 aa PF23007 DnaA_N-like_STI 859-939 aa

XP_057797639.1

1120 aa

560

1120

DNA_pol3_delta2

AAA

DNA_pol3_gamma3

DnaA_N-like_STI

PF13177 DNA_pol3_delta2 440-599 aa PF00004 AAA 460-596 aa PF12169 DNA_pol3_gamma3 653-775 aa PF23007 DnaA_N-like_STI 859-939 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797638.1`	Pfam	`PF13177`	DNA_pol3_delta2	Domain	440	599	7.2e-25	88.6	DNA polymerase III, delta subunit
`XP_057797638.1`	Pfam	`PF00004`	AAA	Domain	460	596	4.4e-09	37.6	ATPase family associated with various cellular activities (AAA)
`XP_057797638.1`	Pfam	`PF12169`	DNA_pol3_gamma3	Family	653	775	1.9e-07	31.7	DNA polymerase III subunits gamma and tau domain III
`XP_057797638.1`	Pfam	`PF23007`	DnaA_N-like_STI	Domain	859	939	2.1e-28	99.0	STICHEL, DnaA_N-like alpha-beta domain
`XP_057797639.1`	Pfam	`PF13177`	DNA_pol3_delta2	Domain	440	599	7.2e-25	88.6	DNA polymerase III, delta subunit
`XP_057797639.1`	Pfam	`PF00004`	AAA	Domain	460	596	4.2e-09	37.7	ATPase family associated with various cellular activities (AAA)
`XP_057797639.1`	Pfam	`PF12169`	DNA_pol3_gamma3	Family	653	775	1.9e-07	31.7	DNA polymerase III subunits gamma and tau domain III
`XP_057797639.1`	Pfam	`PF23007`	DnaA_N-like_STI	Domain	859	939	2.1e-28	99.0	STICHEL, DnaA_N-like alpha-beta domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941655.1
CTTCTCAACACTCCAAATCTTACTCTGAAACGCCCATCACTGTTACTCCTCAATACAGACAAATCGCACAACATATTTCTTACTCTGTTTTATACCATCCCAACATTTCTTATTAAAATAACTATACATATTCGAGCTGTGTTCCATCGTTTTCTAGAGAGCCCCTCGTGAAGTTCATGTGCTGGGATATGGCGAAAGAGATCTGAGAAACACTTAATGATGGTAACGGGTCGCTTGCTTATTTCAAAAAGCGGTTGCCT...

XM_057941656.1
CTTCTCAACACTCCAAATCTTACTCTGAAACGCCCATCACTGTTACTCCTCAATACAGACAAATCGCACAACATATTTCTTACTCTGTTTTATACCATCCCAACATTTCTTATTAAAATAACTATACATATTCGAGCTGTGTTCCATCGTTTTCTAGAGAGCCCCTCGTGAAGTTCATGTGCTGGGATATGGCGAAAGAGATCTGAGAAACACTTAATGATGGTAACGGGTCGCTTGCTTATTTCAAAAAGCGGTTGCCT...

CDS

2 records

下载 CDS FASTA

LOC131013537
ATGACCAGGGCAGTTCGAGATCGGATATTAAAGGATGTGAATGGTAATATTAGTGATCATCTACGCAATCACATTCATTTGACAAACTGCATTCATTTGAAGAACCACATGCATAAGAATAGCCCCATCTTGGCGGATTGGGCGTTCATGAGGGACCTCGTTGTTCTTCAGAGGTCGAGGTCGTTGAGGGACCCATCTGCAAGCCCGCCCTCGTGGCATTCCCCGTCTGCTATTGATGTGCTCCTCAAGAGGGGGGAAGG...

Protein

2 records

下载 Protein FASTA

XP_057797638.1
MTRAVRDRILKDVNGNISDHLRNHIHLTNCIHLKNHMHKNSPILADWAFMRDLVVLQRSRSLRDPSASPPSWHSPSAIDVLLKRGEGEDVVAGRPSVGIERGRVSGSSPATAAVSSRGGKDGIRRERRARKGEESERIVGTDEHEEEGEHLVGDRVSGNSQLKEKSLEAKGGYRQDRQLRTLSDQLRNVPAGSDDAVSSRNRGDGRRVFHSEKYSEEAGVSIRHRSSLNRGKRRRFRGGRRSRPSVAARDGAEAQNEMSV...

XP_057797639.1
MTRAVRDRILKDVNGNISDHLRNHIHLTNCIHLKNHMHKNSPILADWAFMRDLVVLQRSRSLRDPSASPPSWHSPSAIDVLLKRGEGEDVVAGRPSVGIERGRVSGSSPATAAVSSRGGKDGIRRERRARKGEESERIVGTDEHEEEGEHLVGDRVSGNSQLKEKSLEAKGGYRQDRQLRTLSDQLRNVPAGSDDAVSSRNRGDGRRVFHSEKYSEEAGVSIRHRSSLNRGKRRRFRGGRRSRPSVAARDGAEAQNEMSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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