当前解析结果
SmilChr02G002449| 统一新 Gene ID | SmilChr02G002449 |
|---|---|
| 名称 | SmilChr02G002449 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase RFK1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 42744678 - 42752394 / + |
| NCBI Gene ID | LOC131013546 |
|---|---|
| GeneID | 131013546 |
| locus_tag | - |
| NCBI Name | LOC131013546 |
| 原始查询 | SmilChr02G002449 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase RFK1 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase RFK1 |
| Arabidopsis | AT1G29750 (RKF1)receptor-like kinase in flowers 1 [Source:NCBI gene (formerly Entrezgene);Acc:839853] identity=56.4; qcov=0.935; evalue=0; confidence=high |
| Rice | Os08g0203400 (SHR5)- identity=42.8; qcov=0.937; evalue=0; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013546 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797647.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797647.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797647.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797647.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797647.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:42745014 |
AGT |
A |
2bp_deletion | frameshift_variant | 10 | A25,B100,B125,B19,B36,B61,B78,C29,C34,C47 |
Chr2:42746834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B70,C57,C58 |
Chr2:42746841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr2:42746988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:42747573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B41 |
Chr2:42747780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:42747923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:42748746 |
CTG |
C |
2bp_deletion | CDS_variant | 4 | A2,B122,C16,C61 |
Chr2:42749530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,C43 |
Chr2:42749620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr2:42749839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B139,B140,B49,C33 |
Chr2:42750045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797647.1PF23598
LRR_14 78-260 aa
PF00560
LRR_1 158-179 aa
PF00560
LRR_1 181-203 aa
PF11721
Malectin 406-589 aa
PF00069
Pkinase 666-934 aa
PF07714
PK_Tyr_Ser-Thr 669-934 aa
XP_057797648.1PF23598
LRR_14 42-205 aa
PF00560
LRR_1 103-124 aa
PF00560
LRR_1 126-148 aa
PF11721
Malectin 351-534 aa
PF00069
Pkinase 611-879 aa
PF07714
PK_Tyr_Ser-Thr 614-879 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797647.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 78 | 260 | 1.2e-12 | 48.0 | Leucine-rich repeat region |
XP_057797647.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 158 | 179 | 3.3e-18 | 62.6 | Leucine Rich Repeat |
XP_057797647.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 181 | 203 | 3.3e-18 | 62.6 | Leucine Rich Repeat |
XP_057797647.1 |
Pfam | PF11721 |
Malectin | Domain | 406 | 589 | 6.2e-33 | 114.9 | Malectin domain |
XP_057797647.1 |
Pfam | PF00069 |
Pkinase | Domain | 666 | 934 | 3.1e-45 | 155.3 | Protein kinase domain |
XP_057797647.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 669 | 934 | 5.1e-49 | 167.6 | Protein tyrosine and serine/threonine kinase |
XP_057797648.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 42 | 205 | 5.7e-12 | 45.8 | Leucine-rich repeat region |
XP_057797648.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 103 | 124 | 2.4e-18 | 63.0 | Leucine Rich Repeat |
XP_057797648.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 126 | 148 | 2.4e-18 | 63.0 | Leucine Rich Repeat |
XP_057797648.1 |
Pfam | PF11721 |
Malectin | Domain | 351 | 534 | 5.7e-33 | 115.0 | Malectin domain |
XP_057797648.1 |
Pfam | PF00069 |
Pkinase | Domain | 611 | 879 | 2.9e-45 | 155.5 | Protein kinase domain |
XP_057797648.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 614 | 879 | 4.7e-49 | 167.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。