Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002455`

染色体: Chr02 坐标: 42842664-42851129 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002455`
名称	SmilChr02G002455
描述	floral homeotic protein AGAMOUS
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42842664 - 42851129 / `+`

ID 对照

NCBI Gene ID	`LOC131013552`
GeneID	`131013552`
locus_tag	`-`
NCBI Name	`LOC131013552`
原始查询	`SmilChr02G002455`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	floral homeotic protein AGAMOUS
产物	floral homeotic protein AGAMOUS
Arabidopsis	`AT4G18960` (AG) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:827631] identity=68.1; qcov=1.01; evalue=1e-112; confidence=high
Rice	`Os01g0201700` (RAG) - identity=66.8; qcov=0.932; evalue=6.19e-107; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131013552

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797654.1`
2	Chromosome	染色体	0.00000	`XP_057797654.1`
3	Centromere	着丝粒	0.00000	`XP_057797654.1`
4	Chromatin	染色质	0.00000	`XP_057797654.1`
5	Telomere	端粒	0.00000	`XP_057797654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42847766`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B98
`Chr2:42847766`	`A`	`AT`	1bp_insertion	CDS_variant	1	B98
`Chr2:42848478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C17
`Chr2:42848494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B65,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797654.1

245 aa

122

245

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 101-188 aa

XP_057797655.1

245 aa

122

245

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 101-188 aa

XP_057797656.1

244 aa

122

244

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 101-187 aa

XP_057797657.1

244 aa

122

244

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 101-187 aa

XP_057797658.1

244 aa

122

244

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 101-187 aa

XP_057797659.1

236 aa

118

236

SRF-TF

K-box

PF00319 SRF-TF 26-73 aa PF01486 K-box 101-188 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797654.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	7.4e-27	93.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057797654.1`	Pfam	`PF01486`	K-box	Family	101	188	2.5e-25	89.1	K-box region
`XP_057797655.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	7.4e-27	93.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057797655.1`	Pfam	`PF01486`	K-box	Family	101	188	2.5e-25	89.1	K-box region
`XP_057797656.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	7.5e-27	93.2	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057797656.1`	Pfam	`PF01486`	K-box	Family	101	187	3.7e-27	95.0	K-box region
`XP_057797657.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	7.5e-27	93.2	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057797657.1`	Pfam	`PF01486`	K-box	Family	101	187	3.7e-27	95.0	K-box region
`XP_057797658.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	7.5e-27	93.2	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057797658.1`	Pfam	`PF01486`	K-box	Family	101	187	3.7e-27	95.0	K-box region
`XP_057797659.1`	Pfam	`PF00319`	SRF-TF	Domain	26	73	6.9e-27	93.4	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057797659.1`	Pfam	`PF01486`	K-box	Family	101	188	2.4e-25	89.2	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057941676.1
ATGTCATTTTCTTGTTTTATAAATACCCACAACTGCTAGTGGAAACAACCATTTTCTGCATCTCTCTTGCAGGTTTGTGAGACAAAAGCTCAAAACACAGAAAAAATCAAGCTTTTTTTCTCAATACCCCCCCGCCCCCAAACACACACCCCACCCCACTAAGCTGGAAATGGAGCTCCAAAGTGATCAATCAAGGGAGATGTCATCTGAGAGGAAGATTGGGAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACAA...

XM_057941671.1
TCATTTTCTTGTTTTATAAATACCCACAACTGCTAGTGGAAACAACCATTTTCTGCATCTCTCTTGCAGGTTTGTGAGACAAAAGCTCAAAACACAGAAAAAATCAAGCTTTTTTTCTCAATACCCCCCCGCCCCCAAACACACACCCCACCCCACTAAGCTGGAAATGGAGCTCCAAAGTGATCAATCAAGGGAGATGTCATCTGAGAGGAAGATTGGGAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAA...

CDS

6 records

下载 CDS FASTA

LOC131013552
ATGGAGCTCCAAAGTGATCAATCAAGGGAGATGTCATCTGAGAGGAAGATTGGGAGGGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGGCAGGTTACCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAGGCCTATGAATTATCTGTGCTTTGTGATGCTGAGGTTGCACTAATTGTTTTCTCAAGCAGAGGCAGACTCTATGAGTATGCCAATAACAGCGTTAAAGCAACAATTGAGAGGTACAAGAA...

Protein

6 records

下载 Protein FASTA

XP_057797654.1
MELQSDQSREMSSERKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKASSDSSSSGSISEANTQYYQQESSKLRAQISNLQNSNRNMVGECLGPLNLRDLKNLETRVERAIGKIRTKKNELLFAEIEYMQKRQEIDLHQNNQFLRAKIAESERGQQHMNLMPGSSDQYHDLIQSQPFDARDYLQVNALQPSDDYHRQDQPSLQLV

XP_057797655.1
MELQSDQSREMSSERKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKASSDSSSSGSISEANTQYYQQESSKLRAQISNLQNSNRNMVGECLGPLNLRDLKNLETRVERAIGKIRTKKNELLFAEIEYMQKRQEIDLHQNNQFLRAKIAESERGQQHMNLMPGSSDQYHDLIQSQPFDARDYLQVNALQPSDDYHRQDQPSLQLV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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