Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002456

染色体: Chr02 坐标: 42851946-42858951 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002456
名称SmilChr02G002456
描述GDSL esterase/lipase At1g29670-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向42851946 - 42858951 / -

ID 对照

NCBI Gene IDLOC131013553
GeneID131013553
locus_tag-
NCBI NameLOC131013553
原始查询SmilChr02G002456

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述GDSL esterase/lipase At1g29670-like
产物GDSL esterase/lipase At1g29670-like
ArabidopsisAT1G29670 (AT1G29670)
GDSL-like Lipase/Acylhydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839844]
identity=46.6; qcov=0.94; evalue=1.45e-75; confidence=high
RiceOs01g0748500 (OsGELP25)
-
identity=45.8; qcov=0.88; evalue=2.59e-74; confidence=high
GOGO:0016788 (hydrolase activity, acting on ester bonds)
KEGG-
PfamPF00657 (Lipase_GDSL)
InterPro-
eggNOG-
NRGeneID:131013553

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Secreted 分泌到胞外 1.00000 XP_057797660.1
2 Nucleus 细胞核 0.00000 XP_057797660.1
3 Chromosome 染色体 0.00000 XP_057797660.1
4 Centromere 着丝粒 0.00000 XP_057797660.1
5 Chromatin 染色质 0.00000 XP_057797660.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:42852112 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:42852133 C T EMS_canonical_SNV CDS_variant 1 B95
Chr2:42852283 T TG 1bp_insertion frameshift_variant 2 B36,B51
Chr2:42852283 T TG 1bp_insertion CDS_variant 2 B36,B51
Chr2:42852917 C T EMS_canonical_SNV CDS_variant 5 B34,B90,C56,C68,C81
Chr2:42856128 TTG T 2bp_deletion frameshift_variant 1 C3
Chr2:42856128 TTG T 2bp_deletion CDS_variant 1 C3
Chr2:42858672 C T EMS_canonical_SNV CDS_variant 1 B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797660.1
350 aa
N
1
175
350
Lipase_GDSL
C
PF00657 Lipase_GDSL 27-327 aa
XP_057797661.1
283 aa
N
1
142
283
Lipase_GDSL
C
PF00657 Lipase_GDSL 27-270 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797660.1 Pfam PF00657 Lipase_GDSL Family 27 327 1.8e-30 107.4 GDSL-like Lipase/Acylhydrolase
XP_057797661.1 Pfam PF00657 Lipase_GDSL Family 27 270 2.4e-24 87.4 GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057941677.1
GTGTTATAGTGCATGTGTGTAGAGCAAGATATTTTGGAATAATTTGAAATAAGGGATCTTTGTTTTTGTGTTTTCTTCTTCCACAAAAAATGGCAGCAAAATTATTTATTTTTTATATGTTATATTTCTGTATACCTTCCGTTTATGGAATGAAACAAGCTCCTTGTGTTTTCTTTTTTGGGGATTCTCTGTTCGACAATGGAAACAACAATTTTCTTCTGACATTTGCCAATGTCAATTATCCACCCTATGGGATTGAT...
XM_057941678.1
TAGTGCATGTGTGTAGAGCAAGATATTTTGGAATAATTTGAAATAAGGGATCTTTGTTTTTGTGTTTTCTTCTTCCACAAAAAATGGCAGCAAAATTATTTATTTTTTATATGTTATATTTCTGTATACCTTCCGTTTATGGAATGAAACAAGCTCCTTGTGTTTTCTTTTTTGGGGATTCTCTGTTCGACAATGGAAACAACAATTTTCTTCTGACATTTGCCAATGTCAATTATCCACCCTATGGGATTGATTATCCG...

CDS

2 records

下载 CDS FASTA
LOC131013553
ATGGCAGCAAAATTATTTATTTTTTATATGTTATATTTCTGTATACCTTCCGTTTATGGAATGAAACAAGCTCCTTGTGTTTTCTTTTTTGGGGATTCTCTGTTCGACAATGGAAACAACAATTTTCTTCTGACATTTGCCAATGTCAATTATCCACCCTATGGGATTGATTATCCGGCCGGTCCCACCGGCAGATTCTCCAACGGCAAAAATTTACCCGATTTTCTCGCTGAATTTTTGGGTTTTGACAATCCTATTCC...
LOC131013553
ATGGCAGCAAAATTATTTATTTTTTATATGTTATATTTCTGTATACCTTCCGTTTATGGAATGAAACAAGCTCCTTGTGTTTTCTTTTTTGGGGATTCTCTGTTCGACAATGGAAACAACAATTTTCTTCTGACATTTGCCAATGTCAATTATCCACCCTATGGGATTGATTATCCGGCCGGTCCCACCGGCAGATTCTCCAACGGCAAAAATTTACCCGATTTTCTCGCTGAATTTTTGGGTTTTGACAATCCTATTCC...

Protein

2 records

下载 Protein FASTA
XP_057797660.1
MAAKLFIFYMLYFCIPSVYGMKQAPCVFFFGDSLFDNGNNNFLLTFANVNYPPYGIDYPAGPTGRFSNGKNLPDFLAEFLGFDNPIPPFATATGANILNGVNYASGGAGILDQSGAALGNVMSLNKQLINHGNTAFKMGLLLGNATRATDHLNKCLYLSNMGNNDYLSNYLMPKFYASSTLFTPQQFAEILINQYRRQLEILYKYGARKVVVFGLGSIAYIPQFRSTNESVDSINRITQQFYNKLAPLVHDLNTDLHAAQ...
XP_057797661.1
MAAKLFIFYMLYFCIPSVYGMKQAPCVFFFGDSLFDNGNNNFLLTFANVNYPPYGIDYPAGPTGRFSNGKNLPDFLAEFLGFDNPIPPFATATGANILNGVNYASGGAGILDQSGAALGNVMSLNKQLINHGNTAFKMGLLLGNATRATDHLNKCLYLSNMGNNDYLSNYLMPKFYASSTLFTPQQFAEILINQYRRQLEILYKYGARKVVVFGLGSIAYIPQFRSTNESVDSINRITQQFYNKLAPLVHDLNTDLHAAQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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