当前解析结果
SmilChr02G002471| 统一新 Gene ID | SmilChr02G002471 |
|---|---|
| 名称 | SmilChr02G002471 |
| 描述 | phytochrome E-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 43108566 - 43115276 / - |
| NCBI Gene ID | LOC131013569 |
|---|---|
| GeneID | 131013569 |
| locus_tag | - |
| NCBI Name | LOC131013569 |
| 原始查询 | SmilChr02G002471 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phytochrome E-like |
| 产物 | phytochrome E-like |
| Arabidopsis | AT4G18130 (PHYE)phytochrome E [Source:NCBI gene (formerly Entrezgene);Acc:827538] identity=58.5; qcov=0.998; evalue=0; confidence=high |
| Rice | Os03g0309200- identity=56.8; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0000155 (phosphorelay sensor kinase activity); GO:0006355 (regulation of DNA-templated transcription); GO:0009584 (detection of visible light); GO:0009585 (red, far-red light phototransduction); GO:0009881 (photoreceptor activity); GO:0017006 (protein-tetrapyrrole linkage); GO:0042803 (protein homodimerization activity) |
| KEGG | - |
| Pfam | PF00360 (PHY); PF00512 (HisKA); PF00989 (PAS); PF01590 (GAF); PF02518 (HATPase_c); PF08446 (PAS_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013569 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057797671.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057797671.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057797671.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797671.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797671.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:43108780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B3,B41,D10,D11 |
Chr2:43108825 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B13 |
Chr2:43108825 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B13 |
Chr2:43108911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr2:43108935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B95,C14,C48 |
Chr2:43108947 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B40 |
Chr2:43108947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:43108959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B114,B70,B85 |
Chr2:43109417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:43109480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,B36,C37 |
Chr2:43109504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr2:43109544 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | A3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797671.1PF08446
PAS_2 70-181 aa
PF01590
GAF 216-382 aa
PF00360
PHY 399-571 aa
PF00989
PAS 600-715 aa
PF00989
PAS 731-850 aa
PF00512
HisKA 876-934 aa
PF02518
HATPase_c 983-1098 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797671.1 |
Pfam | PF08446 |
PAS_2 | Domain | 70 | 181 | 3.2e-33 | 115.4 | PAS fold |
XP_057797671.1 |
Pfam | PF01590 |
GAF | Domain | 216 | 382 | 7.6e-15 | 56.3 | GAF domain |
XP_057797671.1 |
Pfam | PF00360 |
PHY | Domain | 399 | 571 | 3.2e-52 | 177.3 | Phytochrome region |
XP_057797671.1 |
Pfam | PF00989 |
PAS | Domain | 600 | 715 | 2.4e-38 | 131.4 | PAS fold |
XP_057797671.1 |
Pfam | PF00989 |
PAS | Domain | 731 | 850 | 2.4e-38 | 131.4 | PAS fold |
XP_057797671.1 |
Pfam | PF00512 |
HisKA | Domain | 876 | 934 | 5.2e-10 | 40.0 | His Kinase A (phospho-acceptor) domain |
XP_057797671.1 |
Pfam | PF02518 |
HATPase_c | Domain | 983 | 1098 | 1.1e-08 | 36.2 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。