当前解析结果
SmilChr02G002500| 统一新 Gene ID | SmilChr02G002500 |
|---|---|
| 名称 | SmilChr02G002500 |
| 描述 | disease resistance protein Pik-1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 43449618 - 43450674 / - |
| NCBI Gene ID | LOC131013593 |
|---|---|
| GeneID | 131013593 |
| locus_tag | - |
| NCBI Name | LOC131013593 |
| 原始查询 | SmilChr02G002500 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein Pik-1-like |
| 产物 | disease resistance protein Pik-1-like |
| Arabidopsis | AT3G07600 (AT3G07600)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819951] identity=39.7; qcov=0.646; evalue=2.23e-13; confidence=low |
| Rice | Os04g0464100- identity=44.9; qcov=0.788; evalue=4.72e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013593 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057797702.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057797702.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057797702.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797702.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797702.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:43449873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C49,C63 |
Chr2:43449880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C39,C75 |
Chr2:43449926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B61,B67,C29,C5 |
Chr2:43449927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C4 |
Chr2:43449945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:43449961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:43449963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C5 |
Chr2:43449964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr2:43449984 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | A1,B87,C36 |
Chr2:43449984 |
T |
TC |
1bp_insertion | CDS_variant | 3 | A1,B87,C36 |
Chr2:43449991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B87,C36 |
Chr2:43449992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,B53,C53,C70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。