Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002517`

染色体: Chr02 坐标: 43661535-43667700 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002517`
名称	SmilChr02G002517
描述	uncharacterized SmilChr02G002517
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	43661535 - 43667700 / `-`

ID 对照

NCBI Gene ID	`LOC131013609`
GeneID	`131013609`
locus_tag	`-`
NCBI Name	`LOC131013609`
原始查询	`SmilChr02G002517`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721]; symbol=AT1G40087; hit=AT1G40087; species=arabidopsis; confidence=weak
产物	Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721]; symbol=AT1G40087; hit=AT1G40087; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G40087` (AT1G40087) Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721] identity=23.4; qcov=0.748; evalue=6.71e-16; confidence=weak
Rice	`Os02g0129000` - identity=23.2; qcov=0.582; evalue=4.76e-12; confidence=weak
GO	-
KEGG	-
Pfam	PF03004 (Transposase_24)
InterPro	-
eggNOG	-
NR	GeneID:131013609

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797724.1`
2	Chromosome	染色体	0.00000	`XP_057797724.1`
3	Centromere	着丝粒	0.00000	`XP_057797724.1`
4	Chromatin	染色质	0.00000	`XP_057797724.1`
5	Telomere	端粒	0.00000	`XP_057797724.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:43662269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,B57
`Chr2:43662289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:43662315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B20,B30,B90,B92,C73
`Chr2:43662491`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C42
`Chr2:43662491`	`AC`	`A`	1bp_deletion	CDS_variant	1	C42
`Chr2:43663204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B20,B68,C3,D5
`Chr2:43663391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:43663411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C15
`Chr2:43663463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B20,B68,C3,D5
`Chr2:43663488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B20,B68,C3,D5
`Chr2:43663563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A8,B18,C70
`Chr2:43663568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797724.1

519 aa

260

519

Transposase_24

PF03004 Transposase_24 277-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797724.1`	Pfam	`PF03004`	Transposase_24	Family	277	404	9.8e-23	81.6	Plant transposase (Ptta/En/Spm family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009097746.1
AAGGATTAGAGAGAATGAAGCCACTTCGATTAATAATATTTTTGATGATCCAGATGACTTTATTGAAGAAGATGCTAATGTGGTAGAACAACTTTGGAAGAAGAGGAGTATTTTCTTTGATTTACCATATTGGGAACATAACCTTTTAAGGCATAATCTAGATGTAATGCATATTGAGAAAAACGTATGTGACAATCTTCTTGGAACTTTGTTGAATATTGATGGAAAGACTAAAGATGACGAGAGAGCCCGAAAGGACA...

XM_057941741.1
CTTTTCAAGGATGATCCATACAGGTGAAGCTTTGAAGGATGATCCATTTGTTTTGTCCACTAATGCAAAGCAAGTGTTTTATGTGCAAGATGGCAAAGAGAGTGAATGGATGCACATTGTAGAGACAAAGCCTAGGGATTTATATGATATGGGTTCAAATTTGGAGGAGGGATTTATATGATATGGGTGCTTGTAACAATTTTATGTCCTCTTACTATTGATTCACATCATTCTCCACCTATTGATTAAATTCTATAAAA...

CDS

1 records

下载 CDS FASTA

LOC131013609
ATGTTTCGATCCAAAGTGACAATATCCCAGTACAAAAAAGGCCCTCCAACAACAAATTGTAGTTCTCTACCGCCACCATCTTCCACATTCTCACAACCTCTTACTATTGATTCACATCATTCTCCAGATTCTATTTTCAACCACTTGCGTCCACCTTCATTAAATAGTAATTACACACAGCTAAGCCCCCTTCGGCATTCACCATCCCACCTTCATTCTTCCTCCGAGACAGATGATAGTGAATCTAACAACAATGATGA...

Protein

1 records

下载 Protein FASTA

XP_057797724.1
MFRSKVTISQYKKGPPTTNCSSLPPPSSTFSQPLTIDSHHSPDSIFNHLRPPSLNSNYTQLSPLRHSPSHLHSSSETDDSESNNNDDNSHVQVSESNVLENIEIVDDKGHVKLTKMGMKASDVFKLAKGLRILVNVNEHGQPIRAARRVPTRYMMKLVKQPNLCPPDLNDFNDVKHAFGVELLRAVREKFYIPRHENVDNVLIALMGIKFRNNKYRIRKEIYKKTHARLREKLKAVLEASGVHGEELEHRVTFHEFREDQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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