Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002533`

染色体: Chr02 坐标: 44038196-44039191 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002533`
名称	SmilChr02G002533
描述	uncharacterized SmilChr02G002533
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	44038196 - 44039191 / `+`

ID 对照

NCBI Gene ID	`LOC131013626`
GeneID	`131013626`
locus_tag	`-`
NCBI Name	`LOC131013626`
原始查询	`SmilChr02G002533`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cotton fiber protein [Source:NCBI gene (formerly Entrezgene);Acc:839899]; symbol=AT1G30190; hit=AT1G30190; species=arabidopsis; confidence=weak
产物	cotton fiber protein [Source:NCBI gene (formerly Entrezgene);Acc:839899]; symbol=AT1G30190; hit=AT1G30190; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G30190` (AT1G30190) cotton fiber protein [Source:NCBI gene (formerly Entrezgene);Acc:839899] identity=75.8; qcov=0.2; evalue=1.23e-08; confidence=weak
Rice	`Os12g0616800` - identity=69; qcov=0.176; evalue=5.71e-07; confidence=weak
GO	-
KEGG	-
Pfam	PF05553 (DUF761)
InterPro	-
eggNOG	-
NR	GeneID:131013626

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057797740.1`
2	Cytoplasm	细胞质	0.80000	`XP_057797740.1`
3	Cytosol	细胞质基质	0.40000	`XP_057797740.1`
4	Cell membrane	细胞膜	0.20000	`XP_057797740.1`
5	Chromosome	染色体	0.00000	`XP_057797740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:44038597`	`A`	`AT`	1bp_insertion	frameshift_variant	148	A1,A11,A13,A14,A15,A16,A2,A21,A22,A4,A5,A6,A9,B10,B100,B101,B102,B103,B104,B106,B108,B110,B111,B112,B114,B118,B119,B12,B120,B121,B122,B124,B125,B127,B131,B132,B134,B138,B14,B15,B16,B18,B19,B2,B20,B21,B23,B25,B26,B28,B3,B30,B31,B32,B36,B37,B40,B41,B44,B47,B48,B49,B53,B55,B58,B59,B6,B61,B63,B64,B65,B66,B67,B68,B69,B7,B71,B75,B78,B8,B81,B83,B84,B87,B88,B90,B92,B93,B94,B95,B98,B99,C11,C12,C13,C15,C16,C17,C19,C2,C20,C23,C24,C29,C30,C34,C36,C37,C39,C4,C40,C42,C43,C46,C47,C48,C5,C51,C53,C56,C57,C59,C62,C64,C65,C66,C69,C7,C70,C72,C76,C77,C79,C8,C80,C81,C86,C87,C9,D1,D10,D11,D2,D5,D6,D7,D8,D9
`Chr2:44038739`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	B102
`Chr2:44038739`	`TTC`	`T`	2bp_deletion	CDS_variant	1	B102
`Chr2:44038744`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	B102
`Chr2:44038744`	`G`	`GAA`	2bp_insertion	CDS_variant	1	B102
`Chr2:44038858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B63,B81,B83
`Chr2:44038962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B104,B63,B83
`Chr2:44038984`	`CA`	`C`	1bp_deletion	frameshift_variant	99	A1,A18,A2,A22,A23,A24,A4,A9,B10,B107,B108,B109,B112,B118,B119,B120,B122,B123,B127,B128,B13,B130,B131,B132,B138,B139,B16,B17,B18,B20,B25,B26,B3,B30,B31,B32,B36,B41,B44,B48,B51,B54,B58,B61,B65,B67,B68,B69,B7,B71,B75,B78,B8,B81,B84,B88,B90,B92,B93,B95,B99,C11,C12,C14,C15,C16,C19,C2,C20,C23,C24,C34,C4,C40,C42,C51,C53,C56,C57,C62,C64,C66,C69,C7,C70,C72,C78,C79,C8,C81,C82,C87,C9,D10,D2,D4,D6,D7,D8
`Chr2:44038988`	`TA`	`T`	1bp_deletion	frameshift_variant	166	A10,A11,A14,A15,A16,A18,A19,A20,A21,A25,A3,A5,A7,A8,B1,B10,B100,B101,B102,B105,B106,B107,B11,B113,B115,B118,B119,B12,B120,B123,B124,B126,B128,B129,B13,B131,B132,B133,B134,B135,B136,B137,B138,B140,B15,B16,B2,B21,B22,B24,B25,B27,B28,B29,B31,B32,B33,B34,B35,B37,B38,B39,B40,B42,B43,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B54,B56,B57,B6,B60,B62,B63,B66,B69,B70,B71,B73,B74,B76,B77,B79,B8,B80,B82,B85,B89,B9,B90,B91,B92,B93,B96,B97,B98,C1,C10,C11,C13,C14,C15,C17,C18,C2,C21,C22,C25,C26,C27,C29,C3,C30,C31,C32,C33,C35,C36,C38,C39,C40,C42,C43,C44,C45,C46,C49,C5,C50,C52,C54,C55,C58,C59,C6,C60,C61,C62,C63,C67,C68,C69,C7,C71,C73,C76,C78,C80,C82,C83,C84,C85,C86,C9,D2,D3,D4,D5
`Chr2:44039076`	`A`	`AT`	1bp_insertion	frameshift_variant	97	A1,A14,A15,A20,A23,A24,A3,A7,A8,A9,B10,B105,B109,B11,B113,B117,B118,B120,B123,B128,B129,B131,B139,B18,B22,B29,B34,B35,B38,B39,B4,B41,B42,B43,B44,B45,B48,B5,B52,B56,B58,B60,B62,B67,B68,B69,B73,B75,B77,B79,B8,B82,B84,B86,B9,B91,B95,B96,B97,B99,C1,C10,C11,C14,C15,C23,C24,C25,C27,C28,C31,C33,C4,C40,C42,C49,C52,C54,C62,C64,C66,C69,C7,C71,C73,C75,C78,C82,C83,C85,C9,D1,D2,D3,D4,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797740.1

165 aa

165

DUF761

PF05553 DUF761 99-119 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797740.1`	Pfam	`PF05553`	DUF761	Family	99	119	6.3e-07	29.6	Cotton fibre expressed protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941757.1
ACGCTATAAATTCCTCTCTTCATTTCCATTATGTACAAAATCTCACCCTCCCAATCAAAACCACCCAAATTCTCTGAAAATGGCCATCCCATTTCCAGATTTCCCAGAAAACCCAATAAATTTTAAATCACTGAACAAGAATCAAAACTTGGAAAAACTCAAAAAGAGTACTAAACCCAACCAAAAATCACTGTGGGCATTTTTGTCTTCCATTTTGATATACACTTCCGTGTTCTACATTTTTAACCTCTCACCTTCGA...

CDS

1 records

下载 CDS FASTA

LOC131013626
ATGATCAAAGACAACACCGCCGCCACATCGTCTATCACTATCAAAGACACTGCTGCCACGTCACCCAAAGGCGGCGCCATCGTCTTGTTTGAGGCGACTACGTGGCATGACGTGAAAGAAGAAGAGAATCCCAAGGAGAAGATTCGCGCGCGGAGTAATTCCGTGGTCGTGGCGGCGGCGGAGGAAGAGGGGAAGGCGATGGTTTTGCATAGAACATTGTCGGAGAAGCACGATCGCGAAGATCATCGATCATTCGAAGA...

Protein

1 records

下载 Protein FASTA

XP_057797740.1
MIKDNTAATSSITIKDTAATSPKGGAIVLFEATTWHDVKEEENPKEKIRARSNSVVVAAAEEEGKAMVLHRTLSEKHDREDHRSFEDEKVNEFSQMSNEELNKRVEEFIRRFNRQIRLQARHNLEMNQIQLRSMRPEFEFLCIKKSLFYQLLHIHFMKLRFFFSP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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