当前解析结果
SmilChr02G002536| 统一新 Gene ID | SmilChr02G002536 |
|---|---|
| 名称 | SmilChr02G002536 |
| 描述 | uncharacterized SmilChr02G002536 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 44134396 - 44137028 / - |
| NCBI Gene ID | LOC131009572 |
|---|---|
| GeneID | 131009572 |
| locus_tag | - |
| NCBI Name | LOC131009572 |
| 原始查询 | SmilChr02G002536 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=24.2; qcov=0.955; evalue=1.29e-59; confidence=weak |
| Rice | Os12g0597300- identity=26.4; qcov=0.666; evalue=5.43e-54; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009572 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792971.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792971.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792971.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792971.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792971.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:44134454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:44134539 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | A18,A2,B122,C60,C61 |
Chr2:44134539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,A2,B122,C60,C61 |
Chr2:44134569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:44134571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:44134601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C81 |
Chr2:44134615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr2:44134630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr2:44134677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C85 |
Chr2:44134703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,B38 |
Chr2:44134704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B33,C87 |
Chr2:44134720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C29,C5,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792971.1PF00872
Transposase_mut 427-527 aa
PF10551
MULE 428-522 aa
PF04434
SWIM 671-701 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792971.1 |
Pfam | PF00872 |
Transposase_mut | Family | 427 | 527 | 1.4e-10 | 41.4 | Transposase, Mutator family |
XP_057792971.1 |
Pfam | PF10551 |
MULE | Domain | 428 | 522 | 2.8e-19 | 70.0 | MULE transposase domain |
XP_057792971.1 |
Pfam | PF04434 |
SWIM | Domain | 671 | 701 | 3.6e-07 | 30.3 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。