Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002547`

染色体: Chr02 坐标: 44322692-44324379 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002547`
名称	SmilChr02G002547
描述	putative F-box/LRR-repeat protein 9
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	44322692 - 44324379 / `+`

ID 对照

NCBI Gene ID	`LOC131013639`
GeneID	`131013639`
locus_tag	`-`
NCBI Name	`LOC131013639`
原始查询	`SmilChr02G002547`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative F-box/LRR-repeat protein 9
产物	putative F-box/LRR-repeat protein 9
Arabidopsis	`AT4G05460` (AT4G05460) RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825896] identity=43; qcov=0.861; evalue=2.46e-50; confidence=medium
Rice	`Os02g0317300` (OsFbox086) - identity=35.5; qcov=0.88; evalue=3.34e-33; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131013639

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797750.1`
2	Cytoplasm	细胞质	0.20000	`XP_057797750.1`
3	Cytosol	细胞质基质	0.20000	`XP_057797751.1`
4	Chromosome	染色体	0.00000	`XP_057797751.1`
5	Centromere	着丝粒	0.00000	`XP_057797751.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:44323239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B135,C27,C44
`Chr2:44323245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:44323255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:44323286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:44323312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C36,C48
`Chr2:44323374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C74
`Chr2:44323534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B135,C27,C44
`Chr2:44323818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr2:44324216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797750.1

279 aa

140

279

F-box

F-box-like

PF00646 F-box 46-88 aa PF12937 F-box-like 46-90 aa

XP_057797751.1

259 aa

130

259

F-box

F-box-like

PF00646 F-box 46-88 aa PF12937 F-box-like 46-90 aa

XP_057797752.1

259 aa

130

259

F-box

F-box-like

PF00646 F-box 46-88 aa PF12937 F-box-like 46-90 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797750.1`	Pfam	`PF00646`	F-box	Domain	46	88	8.9e-07	29.3	F-box domain
`XP_057797750.1`	Pfam	`PF12937`	F-box-like	Domain	46	90	6e-08	33.0	F-box-like
`XP_057797751.1`	Pfam	`PF00646`	F-box	Domain	46	88	7.1e-07	29.6	F-box domain
`XP_057797751.1`	Pfam	`PF12937`	F-box-like	Domain	46	90	5.4e-08	33.2	F-box-like
`XP_057797752.1`	Pfam	`PF00646`	F-box	Domain	46	88	7.1e-07	29.6	F-box domain
`XP_057797752.1`	Pfam	`PF12937`	F-box-like	Domain	46	90	5.4e-08	33.2	F-box-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941769.1
ACATATATATTGCACACACTGTATATCTGAAGAACACATAACAGAGATAGAATACAAAATTCGTGGATGATGCATTGCCTGCACAACATGCGAAATCTATGATTCAAAGCTCAATCAAATGTAGTCATATCTCAAGGACTCAAGATGGAAGATCCAAAAACTCGAATCAAGATCAAGATCAAATTTGAGAAGATCGTAACATGGTACAAGAGGTTCAGATTTGGAAAGTTGCCGGAGCAGAAAAGTCCGGCGGCGGAGGC...

XM_057941768.1
ACATATATATTGCACACACTGTATATCTGAAGAACACATAACAGAGATAGAATACAAAATTCGTGGATGATGCATTGCCTGCACAACATGCGAAATCTATGATTCAAAGCTCAATCAAATGTAGTCATATCTCAAGGACTCAAGATGGAAGATCCAAAAACTCGAATCAAGATCAAGATCAAATTTGAGAAGATCGTAACATGGTACAAGAGGTTCAGATTTGGAAAGTTGCCGGAGCAGAAAAGTCCGGCGGCGGAGGC...

CDS

3 records

下载 CDS FASTA

LOC131013639
ATGGAAGATCCAAAAACTCGAATCAAGATCAAGATCAAATTTGAGAAGATCGTAACATGGTACAAGAGGTTCAGATTTGGAAAGTTGCCGGAGCAGAAAAGTCCGGCGGCGGAGGCTCCTCCGTCGTTCGCGCCGTGGATCGATCTGCCGTTAGACGTGACGGCGGATATCCTGCACAGGCTGGGAGCGGCGGAGATGCTGGAGACGGCGGAGAAGGTGTGCAAGACGTGGCGGAGCGTGTGCCGTGAGCCGAGCATGTG...

Protein

3 records

下载 Protein FASTA

XP_057797750.1
MEDPKTRIKIKIKFEKIVTWYKRFRFGKLPEQKSPAAEAPPSFAPWIDLPLDVTADILHRLGAAEMLETAEKVCKTWRSVCREPSMWRVVDVKNSGSCYDTRRLGSMCRRAVDRSGGDLMDINIEYFGNDELLHYISQRSSKLKRLRLSCCKNVSGKGVSSAAKRFRELEELHILFMNQMVVEDVEAIGVECLSLRSFTLIKHDAVSGVGNGNDYLVAIAKVMPNLVHLRLGFFGSTITNKGYQAILDGCPRVESLQRYR...

XP_057797751.1
MEDPKTRIKIKIKFEKIVTWYKRFRFGKLPEQKSPAAEAPPSFAPWIDLPLDVTADILHRLGAAEMLETAEKVCKTWRSVCREPSMWRVVDVKNSGSCYDTRRLGSMCRRAVDRSGGDLMDINIEYFGNDELLHYISQRSSKLKRLRLSCCKNVSGKGVSSAAKRFRELEELHILFMNQMVVEDVEAIGVECLSLRSFTLIKHDAVSGVGNGNDYLVAIAKVMPNLVHLRLGFFGSTITNKGYQAILDGCPRVESLICW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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