Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002553`

染色体: Chr02 坐标: 44425571-44436481 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002553`
名称	SmilChr02G002553
描述	cation-chloride cotransporter 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	44425571 - 44436481 / `+`

ID 对照

NCBI Gene ID	`LOC131013646`
GeneID	`131013646`
locus_tag	`-`
NCBI Name	`LOC131013646`
原始查询	`SmilChr02G002553`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation-chloride cotransporter 1
产物	cation-chloride cotransporter 1
Arabidopsis	`AT1G30450` (CCC1) cation-chloride co-transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:839924] identity=80.9; qcov=0.985; evalue=0; confidence=high
Rice	`Os08g0323700` (Os) - identity=78.6; qcov=1; evalue=0; confidence=high
GO	GO:0006811 (monoatomic ion transport); GO:0015377 (chloride:monoatomic cation symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00324 (AA_permease); PF03522 (SLC12); PF13520 (AA_permease_2)
InterPro	-
eggNOG	-
NR	GeneID:131013646

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797758.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057797758.1`
3	Vesicle	囊泡	0.20000	`XP_057797758.1`
4	Cell projection	细胞突起	0.20000	`XP_057797758.1`
5	Axon	Axon	0.20000	`XP_057797758.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:44426009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr2:44427011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:44427388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B65,C19
`Chr2:44430687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B140,B78,B85,C72
`Chr2:44433930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B31,B40,C20,C6
`Chr2:44434004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B135,C58,C76,C84
`Chr2:44434104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr2:44435397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,D11
`Chr2:44435622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:44435703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B109,B60
`Chr2:44435949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:44436141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B108,C12,C23,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797758.1

990 aa

495

990

AA_permease

AA_permease_2

SLC12

PF00324 AA_permease 146-619 aa PF13520 AA_permease_2 168-585 aa PF03522 SLC12 660-781 aa PF03522 SLC12 792-989 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797758.1`	Pfam	`PF00324`	AA_permease	Domain	146	619	5.2e-53	181.1	Amino acid permease
`XP_057797758.1`	Pfam	`PF13520`	AA_permease_2	Family	168	585	2.1e-15	57.3	Amino acid permease
`XP_057797758.1`	Pfam	`PF03522`	SLC12	Family	660	781	1.7e-41	143.4	Solute carrier family 12
`XP_057797758.1`	Pfam	`PF03522`	SLC12	Family	792	989	1.7e-41	143.4	Solute carrier family 12

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941775.1
AGAAGTATTTGCAGAGAGGAGAGAGAGAAAGGGAGAGAGAAATAAACACCGTTTTCTTCAATCCGTCAAAGTCCAAATACCTTTCTCTCTCTTACGATACATACATCAATATAGAAAGAGAAACAAATCCCAGCTTTCCTTCAGCTTTCAATCTCCATTTGTGCGAACTGTCAAATTCGTTTCTTTTACTTCTACATCCTCGTAGATCTGAATCCCTTTTCCTCCCCTCATTCTTAACCCCTATCATTTACAAGGGATTT...

CDS

1 records

下载 CDS FASTA

LOC131013646
ATGGCGGATGAAAACAATGGCGTCGAGATAGAGGCGGCGGAAGACAATGAGTTTGCGGCGGGGAGGGGTTTGGGCGGCCGCCAGTACCGCCCAGTATTCGCGCACGACAACGATCGAGCCGTTCTAGAGATGGCGTCGATCGATCCTATCGCCCGCGCCTCGTCCTCCGCTTCGCTCACCGATTCTAATGATCTGAAAGTTAAAGTGGCGTCTGGTGGAAAAGATGGATCACTATCTAATCATAGAGATGTCAACGGCTC...

Protein

1 records

下载 Protein FASTA

XP_057797758.1
MADENNGVEIEAAEDNEFAAGRGLGGRQYRPVFAHDNDRAVLEMASIDPIARASSSASLTDSNDLKVKVASGGKDGSLSNHRDVNGSHPESKLELFGFDSLVNILGLKSMASDQLQAPSSPRDGEDAPIHVERPKGNNVKLGTVMGVFVPCLQNILGIIYYIRFSWIVGMAGIGQSLLLVAFCGSCTFLTTISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNALPAAGIFRDT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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