当前解析结果
SmilChr02G002560| 统一新 Gene ID | SmilChr02G002560 |
|---|---|
| 名称 | SmilChr02G002560 |
| 描述 | peroxidase 12-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 44525291 - 44529153 / - |
| NCBI Gene ID | LOC131010037 |
|---|---|
| GeneID | 131010037 |
| locus_tag | - |
| NCBI Name | LOC131010037 |
| 原始查询 | SmilChr02G002560 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 12-like |
| 产物 | peroxidase 12-like |
| Arabidopsis | AT1G71695 (AT1G71695)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843498] identity=61.6; qcov=0.985; evalue=2.97e-153; confidence=high |
| Rice | Os01g0962700 (prx20)- identity=59.4; qcov=0.866; evalue=2.82e-129; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00901 (Indole alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010037 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057793414.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057793414.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793414.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793414.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793414.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:44525444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A16,B36,B44,B70 |
Chr2:44525445 |
GC |
G |
1bp_deletion | frameshift_variant | 59 | A11,A13,A16,A18,A19,A24,A25,A3,A6,B100,B108,B128,B130,B136,B17,B2,B26,B45,B49,B51,B55,B56,B81,B84,B89,B90,B92,B94,B96,B97,C1,C13,C14,C16,C17,C23,C25,C31,C36,C37,C41,C44,C47,C49,C51,C53,C55,C57,C6,C60,C65,C66,C76,C78,C80,C83,D11,D5,D6 |
Chr2:44525497 |
C |
CG |
1bp_insertion | frameshift_variant | 21 | A25,B100,B130,B16,B17,B26,B45,B56,B81,B96,C23,C36,C37,C41,C47,C49,C51,C57,C60,C65,D11 |
Chr2:44525617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B136,B26,B40,C12,C60 |
Chr2:44525625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,D11 |
Chr2:44525628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B42,B43,B98,C71 |
Chr2:44525645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr2:44525668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,B73 |
Chr2:44525726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr2:44525751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr2:44525829 |
CG |
C |
1bp_deletion | frameshift_variant | 67 | A1,A14,A15,A2,A20,A5,B100,B107,B111,B122,B125,B133,B135,B136,B138,B14,B15,B19,B21,B25,B32,B33,B37,B42,B43,B44,B46,B47,B49,B55,B57,B59,B6,B60,B61,B69,B79,B80,B90,B92,B98,C20,C21,C26,C27,C29,C34,C36,C39,C41,C43,C44,C48,C51,C54,C56,C58,C60,C61,C63,C65,C70,C71,C74,D11,D4,D9 |
Chr2:44525831 |
G |
GC |
1bp_insertion | frameshift_variant | 68 | A1,A14,A15,A2,A20,A25,A5,B100,B107,B111,B122,B125,B133,B135,B136,B138,B14,B15,B19,B21,B25,B32,B33,B37,B42,B43,B44,B46,B47,B49,B55,B57,B59,B6,B60,B61,B69,B79,B80,B90,B92,B98,C20,C21,C26,C27,C29,C34,C36,C39,C41,C44,C48,C51,C54,C56,C58,C60,C61,C63,C65,C70,C71,C73,C74,D11,D4,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793414.1PF00141
peroxidase 46-287 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793414.1 |
Pfam | PF00141 |
peroxidase | Domain | 46 | 287 | 2.6e-84 | 283.5 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。