当前解析结果
SmilChr02G002567| 统一新 Gene ID | SmilChr02G002567 |
|---|---|
| 名称 | SmilChr02G002567 |
| 描述 | protein S-acyltransferase 8-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 44668566 - 44675433 / + |
| NCBI Gene ID | LOC131011632 |
|---|---|
| GeneID | 131011632 |
| locus_tag | - |
| NCBI Name | LOC131011632 |
| 原始查询 | SmilChr02G002567 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein S-acyltransferase 8-like |
| 产物 | protein S-acyltransferase 8-like |
| Arabidopsis | AT4G24630 (AT4G24630)DHHC-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:828565] identity=64.5; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0868200- identity=65.2; qcov=0.973; evalue=0; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus); GO:0006612 (protein targeting to membrane); GO:0018230 (peptidyl-L-cysteine S-palmitoylation); GO:0019706 (protein-cysteine S-palmitoyltransferase activity) |
| KEGG | - |
| Pfam | PF01529 (DHHC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011632 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057795387.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057795387.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057795387.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057795387.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057795387.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:44671509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B70,C57,C58 |
Chr2:44673251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:44673518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C53,D3 |
Chr2:44673671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr2:44673700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:44673748 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B28 |
Chr2:44673748 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B28 |
Chr2:44674729 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B127 |
Chr2:44674729 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B127 |
Chr2:44674872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,C40 |
Chr2:44674918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:44675008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795387.1PF01529
DHHC 138-262 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795387.1 |
Pfam | PF01529 |
DHHC | Family | 138 | 262 | 3.6e-40 | 137.8 | DHHC palmitoyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。