当前解析结果
SmilChr02G002574| 统一新 Gene ID | SmilChr02G002574 |
|---|---|
| 名称 | SmilChr02G002574 |
| 描述 | glutathione S-transferase T3-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 44734887 - 44735411 / - |
| NCBI Gene ID | LOC131009583 |
|---|---|
| GeneID | 131009583 |
| locus_tag | - |
| NCBI Name | LOC131009583 |
| 原始查询 | SmilChr02G002574 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione S-transferase T3-like |
| 产物 | glutathione S-transferase T3-like |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=26; qcov=0.598; evalue=1.5e-09; confidence=low |
| Rice | Os09g0241700- identity=29.7; qcov=0.58; evalue=2.02e-08; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009583 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792981.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792981.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792981.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792981.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792981.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:44734909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B55,B87,C22,C74 |
Chr2:44734932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:44734934 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr2:44734934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:44734970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B60 |
Chr2:44735000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C76 |
Chr2:44735028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C42 |
Chr2:44735033 |
TCC |
T |
2bp_deletion | frameshift_variant | 5 | B108,B35,B48,B71,C12 |
Chr2:44735033 |
TCC |
T |
2bp_deletion | CDS_variant | 5 | B108,B35,B48,B71,C12 |
Chr2:44735062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B13,B54,C42 |
Chr2:44735067 |
A |
AT |
1bp_insertion | frameshift_variant | 13 | B119,B130,B136,B28,B29,B30,B35,B66,B76,C29,C70,C73,C76 |
Chr2:44735069 |
TA |
T |
1bp_deletion | frameshift_variant | 11 | B119,B130,B28,B29,B35,B66,B76,C29,C70,C73,C76 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。