当前解析结果
SmilChr02G002614| 统一新 Gene ID | SmilChr02G002614 |
|---|---|
| 名称 | SmilChr02G002614 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 45310224 - 45316119 / - |
| NCBI Gene ID | LOC131009595 |
|---|---|
| GeneID | 131009595 |
| locus_tag | - |
| NCBI Name | LOC131009595 |
| 原始查询 | SmilChr02G002614 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29.8; qcov=0.733; evalue=4.05e-74; confidence=low |
| Rice | Os07g0615900- identity=27.6; qcov=0.753; evalue=3.38e-65; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009595 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792992.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792992.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792992.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792992.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792992.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:45310255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr2:45310326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B49 |
Chr2:45310402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B66,B8,C51,C63,C69 |
Chr2:45310444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B104,B131,C43 |
Chr2:45310462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B13 |
Chr2:45310518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:45310521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr2:45310523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B26,B87,D1 |
Chr2:45310553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C45 |
Chr2:45310564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B140 |
Chr2:45310642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr2:45310749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792992.1PF03101
FAR1 84-179 aa
PF21056
ZSWIM1-3_RNaseH-like 261-380 aa
PF10551
MULE 300-390 aa
PF04434
SWIM 587-608 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792992.1 |
Pfam | PF03101 |
FAR1 | Domain | 84 | 179 | 4.2e-13 | 50.5 | FAR1 DNA-binding domain |
XP_057792992.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 261 | 380 | 6.6e-11 | 43.0 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057792992.1 |
Pfam | PF10551 |
MULE | Domain | 300 | 390 | 3e-25 | 89.2 | MULE transposase domain |
XP_057792992.1 |
Pfam | PF04434 |
SWIM | Domain | 587 | 608 | 1.2e-05 | 25.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。