Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002642`

染色体: Chr02 坐标: 45826543-45828685 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002642`
名称	SmilChr02G002642
描述	phospholipase A1-II 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	45826543 - 45828685 / `-`

ID 对照

NCBI Gene ID	`LOC131011684`
GeneID	`131011684`
locus_tag	`-`
NCBI Name	`LOC131011684`
原始查询	`SmilChr02G002642`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipase A1-II 1-like
产物	phospholipase A1-II 1-like
Arabidopsis	`AT4G18550` (DSEL) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827587] identity=54.4; qcov=0.947; evalue=1.31e-156; confidence=high
Rice	`Os05g0574000` - identity=50.9; qcov=0.971; evalue=7.99e-131; confidence=high
GO	GO:0006629 (lipid metabolic process); GO:0008970 (glycerophospholipid phospholipase A1 activity)
KEGG	-
Pfam	PF01764 (Lipase_3)
InterPro	-
eggNOG	-
NR	GeneID:131011684

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057795455.1`
2	Cytoplasm	细胞质	0.40000	`XP_057795455.1`
3	Nucleus	细胞核	0.00000	`XP_057795455.1`
4	Chromosome	染色体	0.00000	`XP_057795455.1`
5	Centromere	着丝粒	0.00000	`XP_057795455.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:45826905`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:45827170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr2:45827223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:45827240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr2:45827260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B83,C11,C27,C80
`Chr2:45827583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B77,B81
`Chr2:45827631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:45827669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:45827723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:45827724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C16
`Chr2:45827898`	`A`	`ACC`	2bp_insertion	frameshift_variant	2	B29,C37
`Chr2:45827898`	`A`	`ACC`	2bp_insertion	CDS_variant	2	B29,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795455.1

419 aa

210

419

Lipase_3

PF01764 Lipase_3 160-318 aa

XP_057795456.1

419 aa

210

419

Lipase_3

PF01764 Lipase_3 160-318 aa

XP_057795457.1

417 aa

208

417

Lipase_3

PF01764 Lipase_3 158-316 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795455.1`	Pfam	`PF01764`	Lipase_3	Domain	160	318	1.1e-34	120.0	Lipase (class 3)
`XP_057795456.1`	Pfam	`PF01764`	Lipase_3	Domain	160	318	1.1e-34	120.0	Lipase (class 3)
`XP_057795457.1`	Pfam	`PF01764`	Lipase_3	Domain	158	316	1.1e-34	120.0	Lipase (class 3)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939474.1
CACTAATTTTACAACAATCTCGGAACCATTGATGACATGTTGCCATTTCTAGCTTGTTTGCTCATACGACGTAAGCAAGTTCAGCATTTTTCTTGCCACTGTGGTGTATATAATATGCTTAGTTTTAGCTAAGTGTCGGACGCAGAGAAGAAGAAGCTGCTCAGCTCAAGGCAAAGAGGCATGATCTTGAGTAGTTTCAATTGGGGGAAGAGAGAGATAGTCGCCGGAGACAGGGGCATTGCCGCCGGAGAAGGAAGCAT...

XM_057939472.1
ACTAATTTTACAACAATCTCGGAACCATTGATGACATGTTGCCATTTCTAGCTTGTTTGCTCATACGACGTAAGCAAGTTCAGCATTTTTCTTGCCACTGTGGTGTATATAATATGCTTAGTTTTAGCTAAGTGTCGGACGCAGAGAAGAAGAAGCTGCTCAGCTCAAGGCAAAGAGGAGCAGTTTCTTGTTTTGGTTCGTGTACAGGAACAGATATGGGCATGATCTTGAGTAGTTTCAATTGGGGGAAGAGAGAGATA...

CDS

3 records

下载 CDS FASTA

LOC131011684
ATGGGCATGATCTTGAGTAGTTTCAATTGGGGGAAGAGAGAGATAGTCGCCGGAGACAGGGGCATTGCCGCCGGAGAAGGAAGCATCGGCCAGAGATGGAAGCTTCTGAGTGGGGAAAAGAAATGGGAAGGTTTATTAGACCCTTTAGACAACGATCTGCGTCGCTACATACTTCATTATGGAACGATGGCCGAGGTGACCTACGACGCTTTCATATCCGAGGAGGCATCGAGATACGCAGGGAGCTGCAGATATGCAAA...

Protein

3 records

下载 Protein FASTA

XP_057795455.1
MGMILSSFNWGKREIVAGDRGIAAGEGSIGQRWKLLSGEKKWEGLLDPLDNDLRRYILHYGTMAEVTYDAFISEEASRYAGSCRYAKKDLFTKVGIDNGNPFKYRVTKYLYATSSTPVAGALFITSWSRESWTRESNWMGYVAVATDQGKSAIGRRDILIAWRGTVQNLEWVNDLEFNLTTAHEIFGGSDEPKVHFGWHSVYTCADPKSPFNKTSARHQVLGEVRRLAELYKNEEISITITGHSLGGAVSTLNAVDIVVN...

XP_057795456.1
MGMILSSFNWGKREIVAGDRGIAAGEGSIGQRWKLLSGEKKWEGLLDPLDNDLRRYILHYGTMAEVTYDAFISEEASRYAGSCRYAKKDLFTKVGIDNGNPFKYRVTKYLYATSSTPVAGALFITSWSRESWTRESNWMGYVAVATDQGKSAIGRRDILIAWRGTVQNLEWVNDLEFNLTTAHEIFGGSDEPKVHFGWHSVYTCADPKSPFNKTSARHQVLGEVRRLAELYKNEEISITITGHSLGGAVSTLNAVDIVVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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