Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002661`

染色体: Chr02 坐标: 46070906-46081505 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002661`
名称	SmilChr02G002661
描述	PH, RCC1 and FYVE domains-containing protein 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46070906 - 46081505 / `-`

ID 对照

NCBI Gene ID	`LOC131011702`
GeneID	`131011702`
locus_tag	`-`
NCBI Name	`LOC131011702`
原始查询	`SmilChr02G002661`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	PH, RCC1 and FYVE domains-containing protein 1
产物	PH%2C RCC1 and FYVE domains-containing protein 1
Arabidopsis	`AT5G42140` (AT5G42140) Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:834219] identity=71.1; qcov=0.984; evalue=0; confidence=high
Rice	`Os04g0686200` - identity=57.1; qcov=0.999; evalue=0; confidence=high
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00415 (RCC1); PF01363 (FYVE); PF08381 (BRX); PF13540 (RCC1_2); PF13713 (BRX_N); PF16457 (PH_12); PF25390 (WD40_RLD)
InterPro	-
eggNOG	-
NR	GeneID:131011702

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057795482.1`
2	Cytosol	细胞质基质	0.40000	`XP_057795482.1`
3	Nucleus	细胞核	0.00000	`XP_057795482.1`
4	Chromosome	染色体	0.00000	`XP_057795482.1`
5	Centromere	着丝粒	0.00000	`XP_057795482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46071526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B30,B36,B51,C37
`Chr2:46071632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B60
`Chr2:46071739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:46071824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:46072751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B108,B113,B5
`Chr2:46073094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:46073294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr2:46073532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B135,B64,C58,D3
`Chr2:46073693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:46073965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:46074087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:46074358`	`ATG`	`A`	2bp_deletion	frameshift_variant	1	C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795482.1

1130 aa

565

1130

PH_12

WD40_RLD

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

FYVE

BRX_N

BRX

PF16457 PH_12 15-123 aa PF25390 WD40_RLD 239-620 aa PF13540 RCC1_2 283-308 aa PF00415 RCC1 298-347 aa PF13540 RCC1_2 336-361 aa PF00415 RCC1 351-402 aa PF13540 RCC1_2 391-417 aa PF00415 RCC1 406-454 aa PF00415 RCC1 468-516 aa PF13540 RCC1_2 505-533 aa PF00415 RCC1 520-569 aa PF13540 RCC1_2 557-584 aa PF00415 RCC1 574-621 aa PF01363 FYVE 625-691 aa PF13713 BRX_N 875-907 aa PF08381 BRX 1047-1102 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795482.1`	Pfam	`PF16457`	PH_12	Domain	15	123	3e-10	41.3	Pleckstrin homology domain
`XP_057795482.1`	Pfam	`PF25390`	WD40_RLD	Repeat	239	620	1.3e-76	259.0	RCC1-like domain
`XP_057795482.1`	Pfam	`PF13540`	RCC1_2	Repeat	283	308	5.4e-35	119.0	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF00415`	RCC1	Repeat	298	347	4.2e-81	268.1	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF13540`	RCC1_2	Repeat	336	361	5.4e-35	119.0	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF00415`	RCC1	Repeat	351	402	4.2e-81	268.1	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF13540`	RCC1_2	Repeat	391	417	5.4e-35	119.0	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF00415`	RCC1	Repeat	406	454	4.2e-81	268.1	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF00415`	RCC1	Repeat	468	516	4.2e-81	268.1	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF13540`	RCC1_2	Repeat	505	533	5.4e-35	119.0	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF00415`	RCC1	Repeat	520	569	4.2e-81	268.1	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF13540`	RCC1_2	Repeat	557	584	5.4e-35	119.0	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF00415`	RCC1	Repeat	574	621	4.2e-81	268.1	Regulator of chromosome condensation (RCC1) repeat
`XP_057795482.1`	Pfam	`PF01363`	FYVE	Domain	625	691	4.3e-15	56.3	FYVE zinc finger
`XP_057795482.1`	Pfam	`PF13713`	BRX_N	Domain	875	907	3.5e-18	65.7	Transcription factor BRX N-terminal domain
`XP_057795482.1`	Pfam	`PF08381`	BRX	Domain	1047	1102	2.7e-29	101.0	Transcription factor regulating root and shoot growth via Pin3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939499.1
CCCACATTTTATCCCAGCTTAATAATATTTCTCGGTTCTCAGGCAAAGTTTCGGAATTGCTGCATCTCCCTCTGCTTTTTCCTCATCTTTGACTCGCTACTCTCTCTCTCTCTCTACGCGCACACCACCTTCTTCTCTTTCTCTTTCCGCCATTGCTTTCTCTCTCTACGCCAACATTTATTTCTCATTTCCTTTTATTGTTTTCTTCTCTCCACACGCCATCTTCGCCGGCGTCGGAGCCGATATAACGCCGCCGGTGG...

CDS

1 records

下载 CDS FASTA

LOC131011702
ATGGCAGATCTTGTTAGCTACAGTAATGCCGACCGTGACATCGAGCAGGCGTTGGTTGCTCTAAAGAAGGGAGCTCAGCTACTTAAATATGGTCGTAAGGGAAAACCTAAATGTTATCCGTTTAGACTCTCTAATGACGAAACAACATTAATTTGGATTTCTAGTAGTGGTGATAGGAGTTTGAAATTAGCTTCAGTTTCAAGGATTATCCCTGGGCAAAGAACAGCTGTTTTTCAACGATATCTGCGCCCTGAAAAAGA...

Protein

1 records

下载 Protein FASTA

XP_057795482.1
MADLVSYSNADRDIEQALVALKKGAQLLKYGRKGKPKCYPFRLSNDETTLIWISSSGDRSLKLASVSRIIPGQRTAVFQRYLRPEKEYLSFSLIYNNGKRSLDLICKDKVEAENWIAGLKALITSGQAGRSKIDGWGDGGLYFDENRDLTSNSPSNSSVSATREVSSPEVSVSSNIIASPNSYRPDNLVYSERSHVALDQTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICDNVVKVGPEKNAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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