当前解析结果
SmilChr02G002663| 统一新 Gene ID | SmilChr02G002663 |
|---|---|
| 名称 | SmilChr02G002663 |
| 描述 | RING-H2 finger protein ATL16-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46127339 - 46128032 / + |
| NCBI Gene ID | LOC131009609 |
|---|---|
| GeneID | 131009609 |
| locus_tag | - |
| NCBI Name | LOC131009609 |
| 原始查询 | SmilChr02G002663 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL16-like |
| 产物 | RING-H2 finger protein ATL16-like |
| Arabidopsis | AT5G43420 (AT5G43420)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834362] identity=59.3; qcov=0.886; evalue=5.02e-51; confidence=high |
| Rice | Os02g0820200- identity=42.2; qcov=0.899; evalue=1.19e-31; confidence=medium |
| GO | GO:0016567 (protein ubiquitination); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009609 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057793006.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057793006.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057793006.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057793006.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057793006.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46127358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C86 |
Chr2:46127359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,C46 |
Chr2:46127361 |
T |
TAA |
2bp_insertion | frameshift_variant | 56 | A10,A18,A4,A9,B1,B100,B103,B109,B11,B118,B121,B129,B130,B132,B135,B19,B2,B24,B29,B32,B45,B47,B56,B63,B66,B69,B7,B74,B76,B77,B86,B87,B93,B94,B95,C1,C20,C24,C27,C29,C31,C33,C36,C42,C52,C60,C64,C68,C7,C71,C75,C80,C83,C86,C9,D9 |
Chr2:46127369 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr2:46127377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,C22,C74 |
Chr2:46127380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C25,C5 |
Chr2:46127381 |
TC |
T |
1bp_deletion | frameshift_variant | 80 | A11,A16,A2,A21,A25,A4,A5,A6,A9,B1,B101,B108,B110,B115,B117,B118,B122,B124,B125,B126,B128,B132,B140,B17,B2,B20,B25,B28,B3,B38,B39,B40,B42,B44,B53,B55,B56,B63,B64,B7,B72,B75,B78,B9,B90,B92,B96,B97,C12,C13,C16,C19,C2,C30,C32,C35,C39,C4,C40,C42,C43,C48,C49,C53,C59,C61,C63,C64,C66,C67,C68,C77,C8,C84,C86,C87,D11,D6,D8,D9 |
Chr2:46127384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B100,B132,C33,C49 |
Chr2:46127386 |
CCT |
C |
2bp_deletion | frameshift_variant | 2 | B42,B43 |
Chr2:46127386 |
CCT |
C |
2bp_deletion | CDS_variant | 2 | B42,B43 |
Chr2:46127387 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | A10,A15,A2,B11,B118,B56,B9 |
Chr2:46127415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B7,C27,C48,C64,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793006.1PF17123
zf-RING_11 131-157 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793006.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 131 | 157 | 1.1e-09 | 38.5 | RING-like zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。