Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002673`

染色体: Chr02 坐标: 46331998-46335353 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002673`
名称	SmilChr02G002673
描述	serine decarboxylase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46331998 - 46335353 / `+`

ID 对照

NCBI Gene ID	`LOC131011707`
GeneID	`131011707`
locus_tag	`-`
NCBI Name	`LOC131011707`
原始查询	`SmilChr02G002673`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine decarboxylase-like
产物	serine decarboxylase-like
Arabidopsis	`AT1G43710` (EMB1075) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840958] identity=78.4; qcov=0.988; evalue=0; confidence=high
Rice	`Os02g0541325` - identity=85.3; qcov=0.813; evalue=0; confidence=high
GO	GO:0016831 (carboxy-lyase activity); GO:0019752 (carboxylic acid metabolic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00282 (Pyridoxal_deC)
InterPro	-
eggNOG	-
NR	GeneID:131011707

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795487.1`
2	Cytosol	细胞质基质	1.00000	`XP_057795487.1`
3	Nucleus	细胞核	0.20000	`XP_057795488.1`
4	Nucleoplasm	核质	0.20000	`XP_057795488.1`
5	Chromosome	染色体	0.00000	`XP_057795487.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46332168`	`T`	`TA`	1bp_insertion	frameshift_variant	2	B93,C18
`Chr2:46332168`	`T`	`TA`	1bp_insertion	CDS_variant	2	B93,C18
`Chr2:46332209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:46332437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,C13,C59
`Chr2:46332451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B69,B91
`Chr2:46332522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B55,B60,C41
`Chr2:46333472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B132,B63,B77
`Chr2:46333580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B108,B5
`Chr2:46333779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,C22,C74
`Chr2:46334727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B6,C63
`Chr2:46334741`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B95
`Chr2:46334741`	`T`	`TA`	1bp_insertion	CDS_variant	1	B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795487.1

526 aa

263

526

Pyridoxal_deC

PF00282 Pyridoxal_deC 236-449 aa

XP_057795488.1

487 aa

244

487

Pyridoxal_deC

PF00282 Pyridoxal_deC 197-410 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795487.1`	Pfam	`PF00282`	Pyridoxal_deC	Domain	236	449	2.3e-23	83.3	Pyridoxal-dependent decarboxylase conserved domain
`XP_057795488.1`	Pfam	`PF00282`	Pyridoxal_deC	Domain	197	410	1.8e-23	83.6	Pyridoxal-dependent decarboxylase conserved domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939504.1
AAATAAAGTAGCAATTCCGGCACAATTTAAGTCGGCTGCATATTGTATTACTAGCATTTTGCATTTTGCAGTTTAGCATACAGGATACGACACCATTTGAAGCGTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATGTATATATATAAATCTAAGACAAAGCAGCGCACTTGCTCTTCTTCACCTTTCATCTCCGCCGCCTCTTTCGCCCATTTTTCGCGCTTTTCCAAGTATTTGCTCGC...

XM_057939505.1
GTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATGTATATATATAAATCTAAGACAAAGCAGCGCACTTGCTCTTCTTCACCTTTCATCTCCGCCGCCTCTTTCGCCCATTTTTCGCGCTTTTCCAAGTATTTGCTCGCAGGCATTGGGCAGCTAGGGTGATGGTTGGGAGCAGCATTGGGCTCGAGGCAACGATGTCCTCCAACGGATCTTTGGTTAACGGAAAGGCTTTGGATCGGATGA...

CDS

2 records

下载 CDS FASTA

LOC131011707
ATGTATATATATAAATCTAAGACAAAGCAGCGCACTTGCTCTTCTTCACCTTTCATCTCCGCCGCCTCTTTCGCCCATTTTTCGCGCTTTTCCAAGTATTTGCTCGCAGCTAGGGTGATGGTTGGGAGCAGCATTGGGCTCGAGGCAACGATGTCCTCCAACGGATCTTTGGTTAACGGAAAGGCTTTGGATCGGATGACCGCGGCGGAAGAACTAGCCTTTGATCCGACGGAGGTGGTATCGGAGGCAGTTCCGCGGGT...

LOC131011707
ATGGTTGGGAGCAGCATTGGGCTCGAGGCAACGATGTCCTCCAACGGATCTTTGGTTAACGGAAAGGCTTTGGATCGGATGACCGCGGCGGAAGAACTAGCCTTTGATCCGACGGAGGTGGTATCGGAGGCAGTTCCGCGGGTGGTGGAGTCGACCGGTGTAGATGGAGAGATCACGAGAGAGATCGTTTTGGGGAGAAACGTGCATACCACGTGCTTTGAGGTGACGGAGCCCGACGCCGACGACGAGTCTACCGGAGA...

Protein

2 records

下载 Protein FASTA

XP_057795487.1
MYIYKSKTKQRTCSSSPFISAASFAHFSRFSKYLLAARVMVGSSIGLEATMSSNGSLVNGKALDRMTAAEELAFDPTEVVSEAVPRVVESTGVDGEITREIVLGRNVHTTCFEVTEPDADDESTGDKDAYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDDYWGYITNCGTEGNLHGILVGREVFPDGVLYGSKESHYSVFKAARMYRMECVK...

XP_057795488.1
MVGSSIGLEATMSSNGSLVNGKALDRMTAAEELAFDPTEVVSEAVPRVVESTGVDGEITREIVLGRNVHTTCFEVTEPDADDESTGDKDAYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDDYWGYITNCGTEGNLHGILVGREVFPDGVLYGSKESHYSVFKAARMYRMECVKVGTLITGEIDCTDFKAKLLQNKNKPAIINVNIGTTVKGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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