Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002674`

染色体: Chr02 坐标: 46335501-46337831 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002674`
名称	SmilChr02G002674
描述	nuclear transcription factor Y subunit B-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46335501 - 46337831 / `+`

ID 对照

NCBI Gene ID	`LOC131011708`
GeneID	`131011708`
locus_tag	`-`
NCBI Name	`LOC131011708`
原始查询	`SmilChr02G002674`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit B-1
产物	nuclear transcription factor Y subunit B-1
Arabidopsis	`AT5G47670` (NF-YB6) nuclear factor Y, subunit B6 [Source:NCBI gene (formerly Entrezgene);Acc:834818] identity=68.9; qcov=0.74; evalue=5.65e-67; confidence=high
Rice	`Os02g0725700` (OsHAP3E) - identity=87.6; qcov=0.485; evalue=1.56e-59; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex); GO:0046982 (protein heterodimerization activity)
KEGG	-
Pfam	PF00125 (Histone); PF00808 (CBFD_NFYB_HMF)
InterPro	-
eggNOG	-
NR	GeneID:131011708

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795489.1`
2	Chromosome	染色体	0.00000	`XP_057795489.1`
3	Centromere	着丝粒	0.00000	`XP_057795489.1`
4	Chromatin	染色质	0.00000	`XP_057795489.1`
5	Telomere	端粒	0.00000	`XP_057795489.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46337116`	`AG`	`A`	1bp_deletion	frameshift_variant	30	B101,B107,B113,B126,B133,B140,B16,B33,B4,B43,B64,B68,B70,B71,B73,B92,B98,C14,C20,C25,C36,C4,C48,C67,C70,C73,C78,C86,C9,D8
`Chr2:46337139`	`GC`	`G`	1bp_deletion	frameshift_variant	10	B107,B133,B33,B68,B71,C20,C24,C67,D5,D8
`Chr2:46337171`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B107,B73
`Chr2:46337171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B73
`Chr2:46337192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B122,B73,C86
`Chr2:46337214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:46337274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:46337275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B64,B7
`Chr2:46337299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B7
`Chr2:46337336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:46337483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B14,B98
`Chr2:46337493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795489.1

204 aa

102

204

Histone

CBFD_NFYB_HMF

PF00125 Histone 34-111 aa PF00808 CBFD_NFYB_HMF 47-111 aa

XP_057795490.1

200 aa

100

200

Histone

CBFD_NFYB_HMF

PF00125 Histone 30-107 aa PF00808 CBFD_NFYB_HMF 43-107 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795489.1`	Pfam	`PF00125`	Histone	Domain	34	111	2.5e-07	31.7	Core histone H2A/H2B/H3/H4 domain
`XP_057795489.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	47	111	3.2e-26	92.1	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
`XP_057795490.1`	Pfam	`PF00125`	Histone	Domain	30	107	2.4e-07	31.8	Core histone H2A/H2B/H3/H4 domain
`XP_057795490.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	43	107	3.2e-26	92.1	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939506.1
CATAAATGTCGTCTGCCGGTCAAGCCCCTTATTTTTCAACGGCGAATGCCCTTCTCTTGTTTGCAACGCCTCCCCGCCACGTGTCCTTCTCTTTTCTTCCTCCTCTATCAATTAATCACCACTCCTTTTCCAAAAACAACTAAAGAAAAATATTTCTGTGTTATAATTAAGTCTCTCTCTGCGTGTGTGTGTGTGTGATATAGAGAGAGAGAGAAGATGGAACTCGGAGGGAACAATGGAGGCTTCCATGGCTACCGCAG...

XM_057939507.1
ATTTTTCAACGGCGAATGCCCTTCTCTTGTTTGCAACGCCTCCCCGCCACGTGTCCTTCTCTTTTCTTCCTCCTCTATCAATTAATCACCACTCCTTTTCCAAAAACAACTAAAGAAAAATATTTCTGTGTTATAATTAAGTCTCTCTCTGCGTGTGTGTGTGTGTGATATAGAGAGAGAGAGAAGATGGAACTCGGAGGGAACAATGGAGGCTTCCATGGCTACCGCAGGCTCACAACAACCAACTCCGCAGACATGAG...

CDS

2 records

下载 CDS FASTA

LOC131011708
ATGGAACTCGGAGGGAACAATGGAGGCTTCCATGGCTACCGCAGGCTCACAACAACCAACTCCGAGTTGAAAGCAGCAGACATGAGCAACCAGCATGGCGGGGAGGAGTCGGAATGCATCGTCCGCGAGCAGGATCGGTTCATGCCGATAGCCAACGTGATCAGGATCATGCGCAAGATCCTCCCTCCCCACGCTAAAATATCCGATGACGCCAAGGAGACCATCCAAGAATGCGTCTCCGAGTACATCAGCTTCATCAC...

LOC131011708
ATGGAACTCGGAGGGAACAATGGAGGCTTCCATGGCTACCGCAGGCTCACAACAACCAACTCCGCAGACATGAGCAACCAGCATGGCGGGGAGGAGTCGGAATGCATCGTCCGCGAGCAGGATCGGTTCATGCCGATAGCCAACGTGATCAGGATCATGCGCAAGATCCTCCCTCCCCACGCTAAAATATCCGATGACGCCAAGGAGACCATCCAAGAATGCGTCTCCGAGTACATCAGCTTCATCACCAGCGAGGCCAA...

Protein

2 records

下载 Protein FASTA

XP_057795489.1
MELGGNNGGFHGYRRLTTTNSELKAADMSNQHGGEESECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREFDGGSLRGEPLVKRMVDHASMGFHGFPPPAFHHHGFFGAAPMNFFKDSPNAGPSQQAAVACIEPFPQHKDQL

XP_057795490.1
MELGGNNGGFHGYRRLTTTNSADMSNQHGGEESECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREFDGGSLRGEPLVKRMVDHASMGFHGFPPPAFHHHGFFGAAPMNFFKDSPNAGPSQQAAVACIEPFPQHKDQL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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