当前解析结果
SmilChr02G002677| 统一新 Gene ID | SmilChr02G002677 |
|---|---|
| 名称 | SmilChr02G002677 |
| 描述 | abscisic acid 8'-hydroxylase 3-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46349234 - 46351751 / - |
| NCBI Gene ID | LOC131011711 |
|---|---|
| GeneID | 131011711 |
| locus_tag | - |
| NCBI Name | LOC131011711 |
| 原始查询 | SmilChr02G002677 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | abscisic acid 8'-hydroxylase 3-like |
| 产物 | abscisic acid 8'-hydroxylase 3-like |
| Arabidopsis | AT5G45340 (CYP707A3)cytochrome P450, family 707, subfamily A, polypeptide 3 [Source:NCBI gene (formerly Entrezgene);Acc:834570] identity=35.9; qcov=1; evalue=4.23e-103; confidence=medium |
| Rice | Os02g0703600 (OsABA8OX1)- identity=35.4; qcov=0.937; evalue=3.65e-94; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0007275 (multicellular organism development); GO:0010268 (brassinosteroid homeostasis); GO:0016125 (sterol metabolic process); GO:0016132 (brassinosteroid biosynthetic process); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011711 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057795493.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057795493.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795493.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795493.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795493.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46350602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:46350622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,D9 |
Chr2:46351396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B77,B81,B83 |
Chr2:46351595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D9 |
Chr2:46351668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B132,B63,B77,B83 |
Chr2:46351731 |
ATC |
A |
2bp_deletion | frameshift_variant | 68 | A21,A24,A6,B101,B105,B106,B108,B109,B11,B110,B111,B122,B123,B125,B130,B131,B132,B135,B139,B14,B16,B2,B25,B28,B34,B38,B39,B4,B40,B42,B43,B44,B45,B48,B5,B53,B54,B56,B59,B62,B65,B69,B7,B73,B78,B89,B9,B96,B97,B98,C13,C16,C19,C27,C32,C42,C44,C45,C49,C5,C50,C59,C68,C71,C76,C8,C84,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795493.1PF00067
p450 31-459 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795493.1 |
Pfam | PF00067 |
p450 | Domain | 31 | 459 | 1.8e-75 | 255.2 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。