Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002683`

染色体: Chr02 坐标: 46474207-46479321 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002683`
名称	SmilChr02G002683
描述	fructose-1,6-bisphosphatase, cytosolic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46474207 - 46479321 / `-`

ID 对照

NCBI Gene ID	`LOC131011715`
GeneID	`131011715`
locus_tag	`-`
NCBI Name	`LOC131011715`
原始查询	`SmilChr02G002683`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fructose-1,6-bisphosphatase, cytosolic
产物	fructose-1%2C6-bisphosphatase%2C cytosolic
Arabidopsis	`AT1G43670` (FBP) Inositol monophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840953] identity=89.1; qcov=1; evalue=0; confidence=high
Rice	`Os01g0866400` (FR) - identity=86.4; qcov=0.997; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0005986 (sucrose biosynthetic process); GO:0006000 (fructose metabolic process); GO:0006002 (fructose 6-phosphate metabolic process); GO:0006094 (gluconeogenesis); GO:0030388 (fructose 1,6-bisphosphate metabolic process); GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00316 (FBPase); PF18913 (FBPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131011715

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795497.1`
2	Nucleus	细胞核	0.80000	`XP_057795497.1`
3	Cytosol	细胞质基质	0.20000	`XP_057795497.1`
4	Chromosome	染色体	0.00000	`XP_057795497.1`
5	Centromere	着丝粒	0.00000	`XP_057795497.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46476259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B69,B91
`Chr2:46476793`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B61,B95,C14
`Chr2:46478541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B69,B91
`Chr2:46478592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,C22,C74
`Chr2:46478622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795497.1

340 aa

170

340

FBPase

FBPase_C

PF00316 FBPase 13-201 aa PF18913 FBPase_C 205-334 aa

XP_057795498.1

340 aa

170

340

FBPase

FBPase_C

PF00316 FBPase 13-201 aa PF18913 FBPase_C 205-334 aa

XP_057795499.1

340 aa

170

340

FBPase

FBPase_C

PF00316 FBPase 13-201 aa PF18913 FBPase_C 205-334 aa

XP_057795500.1

340 aa

170

340

FBPase

FBPase_C

PF00316 FBPase 13-201 aa PF18913 FBPase_C 205-334 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795497.1`	Pfam	`PF00316`	FBPase	Domain	13	201	3.2e-84	282.0	Fructose-1-6-bisphosphatase, N-terminal domain
`XP_057795497.1`	Pfam	`PF18913`	FBPase_C	Domain	205	334	2.3e-51	173.6	Fructose-1-6-bisphosphatase, C-terminal domain
`XP_057795498.1`	Pfam	`PF00316`	FBPase	Domain	13	201	3.2e-84	282.0	Fructose-1-6-bisphosphatase, N-terminal domain
`XP_057795498.1`	Pfam	`PF18913`	FBPase_C	Domain	205	334	2.3e-51	173.6	Fructose-1-6-bisphosphatase, C-terminal domain
`XP_057795499.1`	Pfam	`PF00316`	FBPase	Domain	13	201	3.2e-84	282.0	Fructose-1-6-bisphosphatase, N-terminal domain
`XP_057795499.1`	Pfam	`PF18913`	FBPase_C	Domain	205	334	2.3e-51	173.6	Fructose-1-6-bisphosphatase, C-terminal domain
`XP_057795500.1`	Pfam	`PF00316`	FBPase	Domain	13	201	3.2e-84	282.0	Fructose-1-6-bisphosphatase, N-terminal domain
`XP_057795500.1`	Pfam	`PF18913`	FBPase_C	Domain	205	334	2.3e-51	173.6	Fructose-1-6-bisphosphatase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939517.1
TTTCTGACAATCATTATTAAAAACATAAGTCAATGTTTTTTGAACAAAAAAGTGATTTTGATGATTGTATATGGCACATAGCATAGCATGTTCCCTCGCACAGTGGATTAAATAATTTGCCGTCATCGAAAAACGCCACCACCAAAACCAGACAAAAACGCCATAACCGCCGATCACCCCTTCCCAGCAAAACTACAAGCTGATATTTAATTGATGCAGCATAAAACCAAAGAATCATTTAAAGAATAAAGACAGATACT...

XM_057939516.1
TTTCTGACAATCATTATTAAAAACATAAGTCAATGTTTTTTGAACAAAAAAGTGATTTTGATGATTGTATATGGCACATAGCATAGCATGTTCCCTCGCACAGTGGATTAAATAATTTGCCGTCATCGAAAAACGCCACCACCAAAACCAGACAAAAACGCCATAACCGCCGATCACCCCTTCCCAGCAAAACTACAAGCTGATATTTAATTGATGCAGCATAAAACCAAAGAATCATTTAAAGAATAAAGACAGATACT...

CDS

4 records

下载 CDS FASTA

LOC131011715
ATGGATCACGCGGCGGATGCTCACCGGACGGATTTGATGACCATAACGCGCTACGTGTTGAACGAGCAGTCCAAGCACCCGGAATCGCGCGGCGACTTCACCATCTTGCTCAGTCATATTGTTCTCGGCTGCAAGTTCGTTTGCACTGCGGTTAACAAGGCTGGTTTGGCGAAGCTCATAGGACTTGCCGGAGAGATGAATGTGCAGGGTGAAGAGCAGAAGAAACTGGATGTGCTCTCAAATGAAGTCTTTGTGAAGGC...

Protein

4 records

下载 Protein FASTA

XP_057795497.1
MDHAADAHRTDLMTITRYVLNEQSKHPESRGDFTILLSHIVLGCKFVCTAVNKAGLAKLIGLAGEMNVQGEEQKKLDVLSNEVFVKALVSSGRTSILVSEEDEEATFVEPSKRGKYCVVFDPLDGSSNIDCAVSIGTIFGIYVLNDGVDPKIEDVLQPGKNMVAAGYCMYGSSCMFVLSTGQGVNGFTLDPSLGEFILTHPDVKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPTDGSPAKSLRYVGSMVADVHRTLL...

XP_057795498.1
MDHAADAHRTDLMTITRYVLNEQSKHPESRGDFTILLSHIVLGCKFVCTAVNKAGLAKLIGLAGEMNVQGEEQKKLDVLSNEVFVKALVSSGRTSILVSEEDEEATFVEPSKRGKYCVVFDPLDGSSNIDCAVSIGTIFGIYVLNDGVDPKIEDVLQPGKNMVAAGYCMYGSSCMFVLSTGQGVNGFTLDPSLGEFILTHPDVKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPTDGSPAKSLRYVGSMVADVHRTLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器