当前解析结果
SmilChr02G002691| 统一新 Gene ID | SmilChr02G002691 |
|---|---|
| 名称 | SmilChr02G002691 |
| 描述 | WAT1-related protein At1g43650-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46619732 - 46624464 / + |
| NCBI Gene ID | LOC131011724 |
|---|---|
| GeneID | 131011724 |
| locus_tag | - |
| NCBI Name | LOC131011724 |
| 原始查询 | SmilChr02G002691 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At1g43650-like |
| 产物 | WAT1-related protein At1g43650-like |
| Arabidopsis | AT1G43650 (UMAMIT22)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949] identity=41.9; qcov=0.913; evalue=1.2e-82; confidence=medium |
| Rice | Os05g0106200 (OsUMAMIT8)- identity=35.2; qcov=0.949; evalue=7.95e-56; confidence=medium |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011724 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795507.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057795508.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057795507.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795507.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795507.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46619799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B2,C27,C44 |
Chr2:46619861 |
GT |
G |
1bp_deletion | frameshift_variant | 46 | A21,A25,A5,A6,B101,B104,B110,B111,B113,B122,B129,B134,B16,B21,B25,B26,B28,B38,B39,B40,B41,B44,B50,B55,B65,B69,B7,B70,B78,B83,B95,B97,C14,C16,C19,C2,C26,C32,C42,C5,C59,C68,C70,C84,D8,D9 |
Chr2:46620344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B5 |
Chr2:46620393 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | B45 |
Chr2:46620393 |
G |
GT |
1bp_insertion | CDS_variant | 1 | B45 |
Chr2:46620397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B139,B4,B97 |
Chr2:46623540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:46623843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795507.1PF00892
EamA 43-177 aa
PF00892
EamA 213-349 aa
XP_057795508.1PF00892
EamA 174-310 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795507.1 |
Pfam | PF00892 |
EamA | Domain | 43 | 177 | 1.3e-28 | 100.7 | EamA-like transporter family |
XP_057795507.1 |
Pfam | PF00892 |
EamA | Domain | 213 | 349 | 1.3e-28 | 100.7 | EamA-like transporter family |
XP_057795508.1 |
Pfam | PF00892 |
EamA | Domain | 174 | 310 | 3.7e-17 | 63.6 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。