Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002694`

染色体: Chr02 坐标: 46673593-46680047 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002694`
名称	SmilChr02G002694
描述	uncharacterized SmilChr02G002694
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46673593 - 46680047 / `+`

ID 对照

NCBI Gene ID	`LOC131011728`
GeneID	`131011728`
locus_tag	`-`
NCBI Name	`LOC131011728`
原始查询	`SmilChr02G002694`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0547200; species=rice; confidence=weak
产物	hit=Os01g0547200; species=rice; confidence=weak
Arabidopsis	`-` -
Rice	`Os01g0547200` - identity=24.2; qcov=0.821; evalue=7.71e-11; confidence=weak
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF02892 (zf-BED); PF23121 (SPOC_AIPP2); PF26664 (zf-BED_2)
InterPro	-
eggNOG	-
NR	GeneID:131011728

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795511.1`
2	Cytoplasm	细胞质	0.20000	`XP_057795519.1`
3	Chromosome	染色体	0.00000	`XP_057795511.1`
4	Centromere	着丝粒	0.00000	`XP_057795511.1`
5	Chromatin	染色质	0.00000	`XP_057795511.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46675715`	`GGT`	`G`	2bp_deletion	frameshift_variant	1	B34
`Chr2:46675715`	`GGT`	`G`	2bp_deletion	CDS_variant	1	B34
`Chr2:46675763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B140,C2,C68,D11
`Chr2:46675999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,C22
`Chr2:46676692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:46676779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B60,C22
`Chr2:46676793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:46676862`	`A`	`AGC`	2bp_insertion	frameshift_variant	1	B29
`Chr2:46676862`	`A`	`AGC`	2bp_insertion	CDS_variant	1	B29
`Chr2:46677944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:46678747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:46678786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B68,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795511.1

652 aa

326

652

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 35-160 aa PF02892 zf-BED 227-263 aa PF02892 zf-BED 412-448 aa PF26664 zf-BED_2 424-473 aa PF26664 zf-BED_2 520-565 aa

XP_057795513.1

651 aa

326

651

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 35-160 aa PF02892 zf-BED 227-263 aa PF02892 zf-BED 411-447 aa PF26664 zf-BED_2 423-472 aa PF26664 zf-BED_2 519-564 aa

XP_057795514.1

651 aa

326

651

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 35-160 aa PF02892 zf-BED 227-263 aa PF02892 zf-BED 411-447 aa PF26664 zf-BED_2 423-472 aa PF26664 zf-BED_2 519-564 aa

XP_057795515.1

650 aa

325

650

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 35-160 aa PF02892 zf-BED 227-263 aa PF02892 zf-BED 410-446 aa PF26664 zf-BED_2 422-471 aa PF26664 zf-BED_2 518-563 aa

XP_057795516.1

634 aa

317

634

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 17-142 aa PF02892 zf-BED 209-245 aa PF02892 zf-BED 394-430 aa PF26664 zf-BED_2 406-455 aa PF26664 zf-BED_2 502-547 aa

XP_057795517.1

557 aa

278

557

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 35-160 aa PF02892 zf-BED 317-353 aa PF26664 zf-BED_2 329-378 aa PF26664 zf-BED_2 425-470 aa

XP_057795518.1

556 aa

278

556

SPOC_AIPP2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 35-160 aa PF02892 zf-BED 316-352 aa PF26664 zf-BED_2 328-377 aa PF26664 zf-BED_2 424-469 aa

XP_057795519.1

524 aa

262

524

SPOC_AIPP2

zf-BED

zf-BED_2

zf-BED

zf-BED_2

PF23121 SPOC_AIPP2 2-32 aa PF02892 zf-BED 99-135 aa PF26664 zf-BED_2 113-160 aa PF02892 zf-BED 284-320 aa PF26664 zf-BED_2 296-345 aa PF26664 zf-BED_2 392-437 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795511.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	35	160	1.7e-39	135.7	AIPP2, SPOC-like domain
`XP_057795511.1`	Pfam	`PF02892`	zf-BED	Domain	227	263	1.3e-20	73.9	BED zinc finger
`XP_057795511.1`	Pfam	`PF02892`	zf-BED	Domain	412	448	1.3e-20	73.9	BED zinc finger
`XP_057795511.1`	Pfam	`PF26664`	zf-BED_2	Domain	424	473	4.8e-26	91.0	BED-like zinc finger
`XP_057795511.1`	Pfam	`PF26664`	zf-BED_2	Domain	520	565	4.8e-26	91.0	BED-like zinc finger
`XP_057795513.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	35	160	1.7e-39	135.7	AIPP2, SPOC-like domain
`XP_057795513.1`	Pfam	`PF02892`	zf-BED	Domain	227	263	1.3e-20	73.9	BED zinc finger
`XP_057795513.1`	Pfam	`PF02892`	zf-BED	Domain	411	447	1.3e-20	73.9	BED zinc finger
`XP_057795513.1`	Pfam	`PF26664`	zf-BED_2	Domain	423	472	4.8e-26	91.0	BED-like zinc finger
`XP_057795513.1`	Pfam	`PF26664`	zf-BED_2	Domain	519	564	4.8e-26	91.0	BED-like zinc finger
`XP_057795514.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	35	160	1.7e-39	135.7	AIPP2, SPOC-like domain
`XP_057795514.1`	Pfam	`PF02892`	zf-BED	Domain	227	263	1.3e-20	73.9	BED zinc finger
`XP_057795514.1`	Pfam	`PF02892`	zf-BED	Domain	411	447	1.3e-20	73.9	BED zinc finger
`XP_057795514.1`	Pfam	`PF26664`	zf-BED_2	Domain	423	472	4.7e-26	91.0	BED-like zinc finger
`XP_057795514.1`	Pfam	`PF26664`	zf-BED_2	Domain	519	564	4.7e-26	91.0	BED-like zinc finger
`XP_057795515.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	35	160	1.7e-39	135.7	AIPP2, SPOC-like domain
`XP_057795515.1`	Pfam	`PF02892`	zf-BED	Domain	227	263	1.3e-20	73.9	BED zinc finger
`XP_057795515.1`	Pfam	`PF02892`	zf-BED	Domain	410	446	1.3e-20	73.9	BED zinc finger
`XP_057795515.1`	Pfam	`PF26664`	zf-BED_2	Domain	422	471	4.7e-26	91.0	BED-like zinc finger
`XP_057795515.1`	Pfam	`PF26664`	zf-BED_2	Domain	518	563	4.7e-26	91.0	BED-like zinc finger
`XP_057795516.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	17	142	1.6e-39	135.8	AIPP2, SPOC-like domain
`XP_057795516.1`	Pfam	`PF02892`	zf-BED	Domain	209	245	1.2e-20	74.0	BED zinc finger
`XP_057795516.1`	Pfam	`PF02892`	zf-BED	Domain	394	430	1.2e-20	74.0	BED zinc finger
`XP_057795516.1`	Pfam	`PF26664`	zf-BED_2	Domain	406	455	4.2e-26	91.1	BED-like zinc finger
`XP_057795516.1`	Pfam	`PF26664`	zf-BED_2	Domain	502	547	4.2e-26	91.1	BED-like zinc finger
`XP_057795517.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	35	160	1.3e-39	136.1	AIPP2, SPOC-like domain
`XP_057795517.1`	Pfam	`PF02892`	zf-BED	Domain	317	353	3.8e-11	43.5	BED zinc finger
`XP_057795517.1`	Pfam	`PF26664`	zf-BED_2	Domain	329	378	9e-19	67.7	BED-like zinc finger
`XP_057795517.1`	Pfam	`PF26664`	zf-BED_2	Domain	425	470	9e-19	67.7	BED-like zinc finger
`XP_057795518.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	35	160	1.3e-39	136.1	AIPP2, SPOC-like domain
`XP_057795518.1`	Pfam	`PF02892`	zf-BED	Domain	316	352	3.8e-11	43.5	BED zinc finger
`XP_057795518.1`	Pfam	`PF26664`	zf-BED_2	Domain	328	377	8.9e-19	67.7	BED-like zinc finger
`XP_057795518.1`	Pfam	`PF26664`	zf-BED_2	Domain	424	469	8.9e-19	67.7	BED-like zinc finger
`XP_057795519.1`	Pfam	`PF23121`	SPOC_AIPP2	Domain	2	32	8.7e-08	33.1	AIPP2, SPOC-like domain
`XP_057795519.1`	Pfam	`PF02892`	zf-BED	Domain	99	135	5.8e-21	75.0	BED zinc finger
`XP_057795519.1`	Pfam	`PF26664`	zf-BED_2	Domain	113	160	1.8e-26	92.4	BED-like zinc finger
`XP_057795519.1`	Pfam	`PF02892`	zf-BED	Domain	284	320	5.8e-21	75.0	BED zinc finger
`XP_057795519.1`	Pfam	`PF26664`	zf-BED_2	Domain	296	345	1.8e-26	92.4	BED-like zinc finger
`XP_057795519.1`	Pfam	`PF26664`	zf-BED_2	Domain	392	437	1.8e-26	92.4	BED-like zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057939528.1
TACAAAATTTGGTGAACTATCATACAACAGTACAGAGTACACTGACTCTCTCTCTCTCTCTCACACACACACACACGCACTAAAGTGTCACTCGCGACTCCCGAGTAAAAATTACTAGTAAAGAAAAGAAAAAAAGAGAGAGAAAGAGAGAAATAATTCAATCTTTGACGAAAACGGAACGCATATGATCTTCGGAATTTTAATCTAAATGCTTAATCATGTTCCGAGCTTCTCCCCCATCGGATTCAGCAACGAATGAC...

XM_057939531.1
TACAAAATTTGGTGAACTATCATACAACAGTACAGAGTACACTGACTCTCTCTCTCTCTCTCACACACACACACACGCACTAAAGTGTCACTCGCGACTCCCGAGTAAAAATTACTAGTAAAGAAAAGAAAAAAAGAGAGAGAAAGAGAGAAATAATTCAATCTTTGACGAAAACGGAACGCATATGATCTTCGGAATTTTAATCTAAATGCTTAATCATGTTCCGAGCTTCTCCCCCATCGGATTCAGCAACGAATGAC...

CDS

8 records

下载 CDS FASTA

LOC131011728
ATGTTCCGAGCTTCTCCCCCATCGGATTCAGCAACGAATGACCAACAAAGTGACATGCGATCTGATTCCAGTGTAGTCGTACATCCAGTTGTTGGTGCAGCATGGAGAGGGAGGTTTAGTATCCCCTGTCTGAATTTAGACATCAATGTAGCTGCTCATGTCTCCAATAAGGCATGCTTGAAAGTATCGGAGGTAGCCAGTACAATGCCCAAGTCATTGTGCTTGGAAATGATTCCACGTATTGATACATGGCCAGCATC...

Protein

8 records

下载 Protein FASTA

XP_057795511.1
MFRASPPSDSATNDQQSDMRSDSSVVVHPVVGAAWRGRFSIPCLNLDINVAAHVSNKACLKVSEVASTMPKSLCLEMIPRIDTWPASFKGSPPTEHSIALFFFSKGRDEEVLDNLVTHAICTDFALKSMIGEAELLIFTSLQLPQNLHRLQGKPYFWGVFRGQQGAVSPQTEYNVHGQTIRARKSLSPNSGYPKSFNLKGSPDSFPSKNSPLTQVSKADRRGRRLDDAWQHAKPLDLLRQKAECRYCGFVSSHGGISRLK...

XP_057795513.1
MFRASPPSDSATNDQQSDMRSDSSVVVHPVVGAAWRGRFSIPCLNLDINVAAHVSNKACLKVSEVASTMPKSLCLEMIPRIDTWPASFKGSPPTEHSIALFFFSKGRDEEVLDNLVTHAICTDFALKSMIGEAELLIFTSLQLPQNLHRLQGKPYFWGVFRGQQGAVSPQTEYNVHGQTIRARKSLSPNSGYPKSFNLKGSPDSFPSKNSPLTQVSKADRRGRRLDDAWQHAKPLDLLRQKAECRYCGFVSSHGGISRLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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