Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002705`

染色体: Chr02 坐标: 46898764-46905493 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002705`
名称	SmilChr02G002705
描述	WAT1-related protein At1g43650-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	46898764 - 46905493 / `-`

ID 对照

NCBI Gene ID	`LOC131011741`
GeneID	`131011741`
locus_tag	`-`
NCBI Name	`LOC131011741`
原始查询	`SmilChr02G002705`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At1g43650-like
产物	WAT1-related protein At1g43650-like
Arabidopsis	`AT1G43650` (UMAMIT22) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949] identity=43.4; qcov=0.997; evalue=9.83e-82; confidence=medium
Rice	`Os05g0106200` (OsUMAMIT8) - identity=38.1; qcov=0.994; evalue=9.84e-64; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:131011741

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057795549.1`
2	Vacuole	液泡	0.40000	`XP_057795548.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057795548.1`
4	Nucleus	细胞核	0.00000	`XP_057795548.1`
5	Chromosome	染色体	0.00000	`XP_057795548.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:46900596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C34,C39
`Chr2:46900626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B4,B97
`Chr2:46900731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,A7,B126
`Chr2:46900753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C80
`Chr2:46900766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B31,C41,C64,C66
`Chr2:46900788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:46903551`	`AT`	`A`	1bp_deletion	frameshift_variant	10	B10,B105,B119,B123,B134,C10,C3,C38,C39,C9
`Chr2:46903562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B135,B85,B9,C58
`Chr2:46903621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,A7,B126,C49
`Chr2:46903637`	`C`	`CT`	1bp_insertion	frameshift_variant	1	D11
`Chr2:46903637`	`C`	`CT`	1bp_insertion	CDS_variant	1	D11
`Chr2:46903654`	`C`	`T`	EMS_canonical_SNV	stop_gained	12	A3,B30,B42,B43,B60,B68,B7,B70,C22,C57,C62,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795548.1

371 aa

186

371

EamA

PF00892 EamA 6-141 aa PF00892 EamA 178-301 aa

XP_057795549.1

348 aa

174

348

EamA

PF00892 EamA 6-141 aa PF00892 EamA 178-315 aa

XP_057795550.1

312 aa

156

312

EamA

PF00892 EamA 6-141 aa PF00892 EamA 178-299 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795548.1`	Pfam	`PF00892`	EamA	Domain	6	141	3.1e-21	76.8	EamA-like transporter family
`XP_057795548.1`	Pfam	`PF00892`	EamA	Domain	178	301	3.1e-21	76.8	EamA-like transporter family
`XP_057795549.1`	Pfam	`PF00892`	EamA	Domain	6	141	1.1e-24	88.0	EamA-like transporter family
`XP_057795549.1`	Pfam	`PF00892`	EamA	Domain	178	315	1.1e-24	88.0	EamA-like transporter family
`XP_057795550.1`	Pfam	`PF00892`	EamA	Domain	6	141	2.7e-22	80.2	EamA-like transporter family
`XP_057795550.1`	Pfam	`PF00892`	EamA	Domain	178	299	2.7e-22	80.2	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939566.1
GATTATTTATTATACATAGAATATTTGAATTAAATTGAGAAAGTGGGTTATTAATCGACACACATTACACAAAAGGTACATAGTTGATGATCAATACTATATAAACTGCAAAAAGAAAGAAAAAAGACAGAAAGCAAAAATAGTAAAGGCATGGAGGAAGAGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGCTTGTGTTGTCAAAGGCAGCTATGTCTGCAGGGATGAAGCCTTCCATCTT...

XM_057939565.1
TACGACCCAAGGCGATTATTTATTATACATAGAATATTTGAATTAAATTGAGAAAGTGGGTTATTAATCGACACACATTACACAAAAGGTACATAGTTGATGATCAATACTATATAAACTGCAAAAAGAAAGAAAAAAGACAGAAAGCAAAAATAGTAAAGGCATGGAGGAAGAGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGCTTGTGTTGTCAAAGGCAGCTATGTCTGCAGGGATGA...

CDS

3 records

下载 CDS FASTA

LOC131011741
ATGGAGGAAGAGAAGGCATACATTGCAGTGGTAGTGATACAATGCAGCTTCGCAGGCATGCTTGTGTTGTCAAAGGCAGCTATGTCTGCAGGGATGAAGCCTTCCATCTTCGTCGCCTACCGACAGGCATTCGCCTTCTTCACTTTGCTCCCCTTCGCCTTCTTCTTCTTCACCAGCAAGGGGTCTCCTCCTCTTACATGGAGTGGGTTATGCAAGATTTTCTTTGTTTCTTCATTTGGATTGGCGTTGAGTTTCAATCT...

Protein

3 records

下载 Protein FASTA

XP_057795548.1
MEEEKAYIAVVVIQCSFAGMLVLSKAAMSAGMKPSIFVAYRQAFAFFTLLPFAFFFFTSKGSPPLTWSGLCKIFFVSSFGLALSFNLSLAGLEYISATFGTATFSIVPAFVFIMAVCLRIESLDIRTWHGVTKVLGSIVSLSGAMAFTFYKGHALYHTSTAHHPLDDKPHSKHQWIVGAFLAITGQLVYAMWLTMQAPLLKQYPGKFRLTILQCGFSCLSATLYVVAVERHPSAWKLRWDIHLLSVAYSGVIVSGMSYGL...

XP_057795549.1
MEEEKAYIAVVVIQCSFAGMLVLSKAAMSAGMKPSIFVAYRQAFAFFTLLPFAFFFFTSKGSPPLTWSGLCKIFFVSSFGLALSFNLSLAGLEYISATFGTATFSIVPAFVFIMAVCLRIESLDIRTWHGVTKVLGSIVSLSGAMAFTFYKGHALYHTSTAHHPLDDKPHSKHQWIVGAFLAITGQLVYAMWLTMQAPLLKQYPGKFRLTILQCGFSCLSATLYVVAVERHPSAWKLRWDIHLLSVAYSGVIVSGMSYGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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