当前解析结果
SmilChr02G002706| 统一新 Gene ID | SmilChr02G002706 |
|---|---|
| 名称 | SmilChr02G002706 |
| 描述 | WAT1-related protein At1g43650-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 46906815 - 46911158 / - |
| NCBI Gene ID | LOC131011742 |
|---|---|
| GeneID | 131011742 |
| locus_tag | - |
| NCBI Name | LOC131011742 |
| 原始查询 | SmilChr02G002706 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At1g43650-like |
| 产物 | WAT1-related protein At1g43650-like |
| Arabidopsis | AT1G43650 (UMAMIT22)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:840949] identity=47.2; qcov=0.937; evalue=2.44e-95; confidence=high |
| Rice | Os07g0524900- identity=40.3; qcov=0.948; evalue=2.17e-74; confidence=medium |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011742 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795551.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057795551.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057795551.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795551.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:46907043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr2:46907057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B13 |
Chr2:46909538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:46909540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B83,C48,C87 |
Chr2:46909588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:46909739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:46909757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,C22 |
Chr2:46909892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B72,C34,C39 |
Chr2:46909932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:46909949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr2:46909956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:46909973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795551.1PF00892
EamA 6-142 aa
PF00892
EamA 177-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795551.1 |
Pfam | PF00892 |
EamA | Domain | 6 | 142 | 3.8e-26 | 92.7 | EamA-like transporter family |
XP_057795551.1 |
Pfam | PF00892 |
EamA | Domain | 177 | 315 | 3.8e-26 | 92.7 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。