当前解析结果
SmilChr02G002724| 统一新 Gene ID | SmilChr02G002724 |
|---|---|
| 名称 | SmilChr02G002724 |
| 描述 | bidirectional sugar transporter SWEET1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47137049 - 47139241 / + |
| NCBI Gene ID | LOC131011759 |
|---|---|
| GeneID | 131011759 |
| locus_tag | - |
| NCBI Name | LOC131011759 |
| 原始查询 | SmilChr02G002724 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bidirectional sugar transporter SWEET1-like |
| 产物 | bidirectional sugar transporter SWEET1-like |
| Arabidopsis | AT1G21460 (SWEET1)Nodulin MtN3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:838744] identity=63.7; qcov=0.995; evalue=9.07e-93; confidence=high |
| Rice | Os01g0881300 (OsSWEET1a)- identity=68.1; qcov=0.843; evalue=3.64e-86; confidence=high |
| GO | GO:0008643 (carbohydrate transport); GO:0016020 (membrane); GO:0051119 (sugar transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF03083 (MtN3_slv) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011759 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795578.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057795578.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795578.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795578.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795578.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47137468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B124,B22,C25 |
Chr2:47138951 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C34 |
Chr2:47138951 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795578.1PF03083
MtN3_slv 10-97 aa
PF03083
MtN3_slv 135-217 aa
XP_057795579.1PF03083
MtN3_slv 2-63 aa
PF03083
MtN3_slv 101-183 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795578.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 10 | 97 | 1.8e-43 | 147.2 | Sugar efflux transporter for intercellular exchange |
XP_057795578.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 135 | 217 | 1.8e-43 | 147.2 | Sugar efflux transporter for intercellular exchange |
XP_057795579.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 2 | 63 | 8e-38 | 129.1 | Sugar efflux transporter for intercellular exchange |
XP_057795579.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 101 | 183 | 8e-38 | 129.1 | Sugar efflux transporter for intercellular exchange |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。