Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002726`

染色体: Chr02 坐标: 47166173-47169244 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002726`
名称	SmilChr02G002726
描述	uncharacterized SmilChr02G002726
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	47166173 - 47169244 / `-`

ID 对照

NCBI Gene ID	`LOC131011761`
GeneID	`131011761`
locus_tag	`-`
NCBI Name	`LOC131011761`
原始查询	`SmilChr02G002726`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sequence-specific DNA binding transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:840982]; symbol=AT1G43860; hit=AT1G43860; species=arabidopsis; confidence=high
产物	sequence-specific DNA binding transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:840982]; symbol=AT1G43860; hit=AT1G43860; species=arabidopsis; confidence=high
Arabidopsis	`AT1G43860` (AT1G43860) sequence-specific DNA binding transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:840982] identity=70.4; qcov=1.04; evalue=0; confidence=high
Rice	`Os08g0107500` - identity=62.4; qcov=1.01; evalue=9e-166; confidence=high
GO	GO:0042254 (ribosome biogenesis); GO:0042256 (cytosolic ribosome assembly)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF01172 (SBDS_N); PF09377 (SBDS_domain_II); PF20268 (SBDS_C)
InterPro	-
eggNOG	-
NR	GeneID:131011761

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795581.1`
2	Cytosol	细胞质基质	0.80000	`XP_057795581.1`
3	Nucleus	细胞核	0.60000	`XP_057795581.1`
4	Chromosome	染色体	0.00000	`XP_057795581.1`
5	Centromere	着丝粒	0.00000	`XP_057795581.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:47166561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,B51
`Chr2:47166603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B127,B23
`Chr2:47166669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C34
`Chr2:47166690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:47168483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,B5
`Chr2:47169047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B68,B82,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795581.1

357 aa

178

357

SBDS_N

SBDS_domain_II

SBDS_C

PF01172 SBDS_N 16-102 aa PF09377 SBDS_domain_II 111-171 aa PF20268 SBDS_C 174-237 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795581.1`	Pfam	`PF01172`	SBDS_N	Domain	16	102	5.6e-30	103.8	Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain
`XP_057795581.1`	Pfam	`PF09377`	SBDS_domain_II	Domain	111	171	1.1e-24	86.7	SBDS protein, domain II
`XP_057795581.1`	Pfam	`PF20268`	SBDS_C	Domain	174	237	4.2e-11	43.3	SBDS protein, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939598.1
TGAAGTTTATAATAGACTTCCAAACACAGCCTAAAGCGCAAAAACTATTTCAGCACAGCTGTTTCATTGCTTTCCATTTCCGTAACAAATATCTTTCGAGGATTCTAGAACGTAAAAGGCTGCCACCGTAAATCATCAGCGGCGCCTCCGCGCAGAGGTATAGCGATGTCGAAAACACTTGTGCAGCCTGTAGGGCAGAAGAGGCTGACCAACGTGGCGGTGGTGCGTCTCAAGAAACACGGAAACCGATTCGAAATCGC...

CDS

1 records

下载 CDS FASTA

LOC131011761
ATGTCGAAAACACTTGTGCAGCCTGTAGGGCAGAAGAGGCTGACCAACGTGGCGGTGGTGCGTCTCAAGAAACACGGAAACCGATTCGAAATCGCTTGCTACAAGAACAAAGTCCTCTCTTGGCGCTCACACGTAGAGAAAGACTTGGATGAAGTGTTGCAGTCACAGACCGTATATTCGAATGTTTCGAAAGGTATTCTAGCTAAGTCGAAAGATTTAGTCCAAGCATTCGGGACAGATGATCAAACTAAAGTTTGTTT...

Protein

1 records

下载 Protein FASTA

XP_057795581.1
MSKTLVQPVGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSHVEKDLDEVLQSQTVYSNVSKGILAKSKDLVQAFGTDDQTKVCLEILEKGELQVAGKERESQLSSQFRDIATIVMQKTYNPETQRPYTISMIERLMHDIHFAVEPNSSSKKQALEVIRELQKQYPIKRSPMRLRLTVPEQNMPSLLEKINGWNSTIVSRDESGSQLSVICELEPGHFRDCDALVRSLQGRLDILAVNVHLDSDTHVDHYDDLEEESS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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