当前解析结果
SmilChr02G002729| 统一新 Gene ID | SmilChr02G002729 |
|---|---|
| 名称 | SmilChr02G002729 |
| 描述 | uncharacterized SmilChr02G002729 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47205786 - 47206265 / - |
| NCBI Gene ID | LOC131009624 |
|---|---|
| GeneID | 131009624 |
| locus_tag | - |
| NCBI Name | LOC131009624 |
| 原始查询 | SmilChr02G002729 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837459]; symbol=AT1G09370; hit=AT1G09370; species=arabidopsis; confidence=low |
| 产物 | Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837459]; symbol=AT1G09370; hit=AT1G09370; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G09370 (AT1G09370)Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837459] identity=28.3; qcov=1; evalue=1.87e-15; confidence=low |
| Rice | -- |
| GO | GO:0043086 (negative regulation of catalytic activity); GO:0046910 (pectinesterase inhibitor activity) |
| KEGG | - |
| Pfam | PF04043 (PMEI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009624 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057793021.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793021.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793021.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793021.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793021.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47205984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B135,B18,B99,C70 |
Chr2:47206077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B71,B93,C30,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793021.1PF04043
PMEI 16-103 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793021.1 |
Pfam | PF04043 |
PMEI | Domain | 16 | 103 | 4.8e-10 | 40.5 | Plant invertase/pectin methylesterase inhibitor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。