Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002739

染色体: Chr02 坐标: 47321993-47324609 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002739
名称SmilChr02G002739
描述uncharacterized SmilChr02G002739
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向47321993 - 47324609 / +

ID 对照

NCBI Gene IDLOC131011773
GeneID131011773
locus_tag-
NCBI NameLOC131011773
原始查询SmilChr02G002739

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:815895]; symbol=AT2G14095; hit=AT2G14095; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:815895]; symbol=AT2G14095; hit=AT2G14095; species=arabidopsis; confidence=low
ArabidopsisAT2G14095 (AT2G14095)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:815895]
identity=32.7; qcov=0.528; evalue=8.08e-11; confidence=low
RiceOs08g0483600 (OJ1111_H02.21-1)
-
identity=29.5; qcov=0.603; evalue=1.78e-07; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131011773

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057795596.1
2 Chloroplast thylakoid 类囊体 1.00000 XP_057795596.1
3 Chloroplast stroma 叶绿体基质 0.20000 XP_057795596.1
4 Chloroplast thylakoid membrane 类囊体膜 0.20000 XP_057795596.1
5 Nucleus 细胞核 0.00000 XP_057795596.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:47322371 G A EMS_canonical_SNV CDS_variant 4 B104,C47,D11,D7
Chr2:47322383 C T EMS_canonical_SNV CDS_variant 2 C43,D9
Chr2:47322822 C T EMS_canonical_SNV CDS_variant 2 B117,B68
Chr2:47323023 G A EMS_canonical_SNV CDS_variant 1 B3
Chr2:47323056 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:47323161 A AG 1bp_insertion frameshift_variant 1 B73
Chr2:47323161 A AG 1bp_insertion CDS_variant 1 B73

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057939615.1
AAAAGAGAAGGAATGGTATATTCAAAATTAACTTTGTTATCAACAAGAAAAGGTATTCACAATTTGAAAAGTCTTTTATTTTTGGAAGGAACATTTGAAAAGTAGTCTCGTCCTCTTATTTTCTTATAGCGCATCGTCCTATAATTCTGGGCCATATAGATGTACTACACTCAACACATACACATCATCATCTTCAATTCTCTTCTCCTATATACAAAACACAAATAAAAATCTTCTTCACACTTTACAATATCTACAGC...
XM_057939613.1
ATGGTATATTCAAAATTAACTTTGTTATCAACAAGAAAAGGTATTCACAATTTGAAAAGTCTTTTATTTTTGGAAGGAACATTTGAAAAGTAGTCTCGTCCTCTTATTTTCTTATAGCGCATCGTCCTATAATTCTGGGCCATATAGATGTACTACACTCAACACATACACATCATCATCTTCAATTCTCTTCTCCTATATACAAAACACAAATAAAAATCTTCTTCACACTTTACAATATCTACAGCAAGATCACAAAC...

CDS

2 records

下载 CDS FASTA
LOC131011773
ATGTTGATCAAGATCACACGAGTTTGCGATTCTTCTCTGAGTGGCTTCAATCATGAAAGCCGCACTCAGAAATCCAAAAATTTCTTACAAAATTCTGATCACAGAAACATGGTTGTTGCCTTCAACTCCAAAGATAAACAAGGTTTCCAACCTCTAAGGAGCCATACAAGATTGCAAAACTATGGCAAAAATACAAGAAAAATTATTGTGCATAGCGTGGAACCAGGAGCTTCGCCGCCGGGGCCTCCTTCGAATATTTT...
LOC131011773
ATGTTGATCAAGATCACACGAGTTTGCGATTCTTCTCTGAGTGGCTTCAATCATGAAAGCCGCACTCAGAAATCCAAAAATTTCTTACAAAATTCTGATCACAGAAACATGGTTGTTGCCTTCAACTCCAAAGATAAACAAGGTTTCCAACCTCTAAGGAGCCATACAAGATTGCAAAACTATGGCAAAAATACAAGAAAAATTATTGTGCATAGCGTGGAACCAGGAGCTTCGCCGCCGGGGCCTCCTTCGAATATTTT...

Protein

2 records

下载 Protein FASTA
XP_057795596.1
MLIKITRVCDSSLSGFNHESRTQKSKNFLQNSDHRNMVVAFNSKDKQGFQPLRSHTRLQNYGKNTRKIIVHSVEPGASPPGPPSNILSWAVGVAVAIVIPFITYKWGPLIKSKVMGALQMAEDVAEAVEKAAEKVEKMAEEIVDDIPKDTKLREVVDFVEKIAERAADEAGAIDDFIDKLQEEEEEKAESPVNSLSDEVKKPPEDSKEEKPNAGN
XP_057795598.1
MLIKITRVCDSSLSGFNHESRTQKSKNFLQNSDHRNMVVAFNSKDKQGFQPLRSHTRLQNYGKNTRKIIVHSVEPGASPPGPPSNIFWAVGVAVAIVIPFITYKWGPLIKSKVMGALQMAEDVAEAVEKAAEKVEKMAEEIVDDIPKDTKLREVVDFVEKIAERAADEAGAIDDFIDKLQEEEEEKAESPVNSLSDEVKKPPEDSKEEKPNAGN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器