当前解析结果
SmilChr02G002782| 统一新 Gene ID | SmilChr02G002782 |
|---|---|
| 名称 | SmilChr02G002782 |
| 描述 | probable calcium-binding protein CML44 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 47907868 - 47908780 / + |
| NCBI Gene ID | LOC131011812 |
|---|---|
| GeneID | 131011812 |
| locus_tag | - |
| NCBI Name | LOC131011812 |
| 原始查询 | SmilChr02G002782 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable calcium-binding protein CML44 |
| 产物 | probable calcium-binding protein CML44 |
| Arabidopsis | AT1G21550 (AT1G21550)Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838756] identity=44.4; qcov=0.95; evalue=5.2e-33; confidence=medium |
| Rice | Os03g0331700 (OsCML27)- identity=39.6; qcov=0.988; evalue=3.07e-24; confidence=medium |
| GO | GO:0005509 (calcium ion binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011812 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057795643.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057795643.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057795643.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057795643.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795643.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:47908232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B21,B51,B77,B91,D2 |
Chr2:47908283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B114,B69,B9,C78 |
Chr2:47908408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B114,B9,C78 |
Chr2:47908410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr2:47908433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr2:47908570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,A9,D1 |
Chr2:47908601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B45,B57,B94,C49,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795643.1PF00036
EF-hand_1 9-35 aa
PF13405
EF-hand_6 9-37 aa
PF13202
EF-hand_5 11-32 aa
PF13833
EF-hand_8 12-35 aa
PF13499
EF-hand_7 87-154 aa
PF00036
EF-hand_1 89-115 aa
PF13405
EF-hand_6 89-118 aa
PF13202
EF-hand_5 90-111 aa
PF00036
EF-hand_1 129-155 aa
PF13202
EF-hand_5 135-153 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795643.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 9 | 35 | 2.6e-21 | 74.2 | EF hand domain |
XP_057795643.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 9 | 37 | 6.4e-20 | 69.6 | EF-hand domain |
XP_057795643.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 11 | 32 | 2e-19 | 68.8 | EF hand |
XP_057795643.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 12 | 35 | 1.4e-08 | 35.1 | EF-hand domain pair |
XP_057795643.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 87 | 154 | 1.6e-19 | 70.7 | EF-hand domain pair |
XP_057795643.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 89 | 115 | 2.6e-21 | 74.2 | EF hand domain |
XP_057795643.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 89 | 118 | 6.4e-20 | 69.6 | EF-hand domain |
XP_057795643.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 90 | 111 | 2e-19 | 68.8 | EF hand |
XP_057795643.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 129 | 155 | 2.6e-21 | 74.2 | EF hand domain |
XP_057795643.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 135 | 153 | 2e-19 | 68.8 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。