Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002796`

染色体: Chr02 坐标: 48039990-48055601 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002796`
名称	SmilChr02G002796
描述	histone-lysine N-methyltransferase ASHH2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48039990 - 48055601 / `-`

ID 对照

NCBI Gene ID	`LOC131011826`
GeneID	`131011826`
locus_tag	`-`
NCBI Name	`LOC131011826`
原始查询	`SmilChr02G002796`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase ASHH2
产物	histone-lysine N-methyltransferase ASHH2
Arabidopsis	`AT1G77300` (EFS) histone-lysine N-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:844066] identity=58.8; qcov=0.333; evalue=3.84e-145; confidence=low
Rice	`Os02g0554000` (OsSDG725) - identity=64.5; qcov=0.304; evalue=2.21e-151; confidence=low
GO	GO:0000785 (chromatin); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding); GO:0010452 (GO:0010452); GO:0046975 (histone H3K36 methyltransferase activity)
KEGG	-
Pfam	PF00856 (SET); PF07496 (zf-CW); PF17907 (AWS)
InterPro	-
eggNOG	-
NR	GeneID:131011826

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795668.1`
2	Nucleoplasm	核质	0.60000	`XP_057795671.1`
3	Nuclear body	核内小体	0.20000	`XP_057795671.1`
4	Chromosome	染色体	0.00000	`XP_057795668.1`
5	Centromere	着丝粒	0.00000	`XP_057795668.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48040210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:48040265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:48040486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B93,C2,D11
`Chr2:48040618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,B80,C20,C60
`Chr2:48040622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,B80,C20,C60
`Chr2:48040783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B54,B80,C44
`Chr2:48041064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:48041205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr2:48044596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:48045555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:48045780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B24,B85,C51
`Chr2:48045836`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795668.1

1691 aa

846

1691

zf-CW

AWS

SET

PF07496 zf-CW 648-694 aa PF17907 AWS 768-802 aa PF00856 SET 816-922 aa

XP_057795669.1

1691 aa

846

1691

zf-CW

AWS

SET

PF07496 zf-CW 648-694 aa PF17907 AWS 768-802 aa PF00856 SET 816-922 aa

XP_057795670.1

1363 aa

682

1363

zf-CW

AWS

SET

PF07496 zf-CW 648-694 aa PF17907 AWS 768-802 aa PF00856 SET 816-922 aa

XP_057795671.1

1092 aa

546

1092

zf-CW

AWS

SET

PF07496 zf-CW 49-95 aa PF17907 AWS 169-203 aa PF00856 SET 217-323 aa

XP_057795672.1

1092 aa

546

1092

zf-CW

AWS

SET

PF07496 zf-CW 49-95 aa PF17907 AWS 169-203 aa PF00856 SET 217-323 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795668.1`	Pfam	`PF07496`	zf-CW	Domain	648	694	5.1e-12	46.3	CW-type Zinc Finger
`XP_057795668.1`	Pfam	`PF17907`	AWS	Domain	768	802	5.1e-12	46.3	AWS domain
`XP_057795668.1`	Pfam	`PF00856`	SET	Family	816	922	4.2e-26	92.2	SET domain
`XP_057795669.1`	Pfam	`PF07496`	zf-CW	Domain	648	694	5.1e-12	46.3	CW-type Zinc Finger
`XP_057795669.1`	Pfam	`PF17907`	AWS	Domain	768	802	5.1e-12	46.3	AWS domain
`XP_057795669.1`	Pfam	`PF00856`	SET	Family	816	922	4.2e-26	92.2	SET domain
`XP_057795670.1`	Pfam	`PF07496`	zf-CW	Domain	648	694	5.4e-12	46.2	CW-type Zinc Finger
`XP_057795670.1`	Pfam	`PF17907`	AWS	Domain	768	802	3.5e-12	46.9	AWS domain
`XP_057795670.1`	Pfam	`PF00856`	SET	Family	816	922	3.2e-26	92.6	SET domain
`XP_057795671.1`	Pfam	`PF07496`	zf-CW	Domain	49	95	1.2e-11	45.2	CW-type Zinc Finger
`XP_057795671.1`	Pfam	`PF17907`	AWS	Domain	169	203	3.4e-12	46.9	AWS domain
`XP_057795671.1`	Pfam	`PF00856`	SET	Family	217	323	2.3e-26	93.0	SET domain
`XP_057795672.1`	Pfam	`PF07496`	zf-CW	Domain	49	95	1.2e-11	45.2	CW-type Zinc Finger
`XP_057795672.1`	Pfam	`PF17907`	AWS	Domain	169	203	3.4e-12	46.9	AWS domain
`XP_057795672.1`	Pfam	`PF00856`	SET	Family	217	323	2.3e-26	93.0	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057939685.1
TAACTTTGTTTGACCCAAAGCTCTCTCTCATCTCTCATCTCTCTTTCGCTCTCTCGCGGCAGAACAGCGCCGCTTCTCTTTCTCTCTTCTTCCTCACTTCTCCGGCGATCAATCCACCGCCGTCCGCCGCCTGTTTCTCCCACCCTCCTCTTCTCCTCTTCAAACTGTTAACAGAAAAATACTTTAACCCCAAGATCAAAATTCCCGAAATCTATTCTCCCTTCCCCGGCGAAAGCTTCGCCGCCTTCCAGCTCACGGTA...

XM_057939687.1
TAACTTTGTTTGACCCAAAGCTCTCTCTCATCTCTCATCTCTCTTTCGCTCTCTCGCGGCAGAACAGCGCCGCTTCTCTTTCTCTCTTCTTCCTCACTTCTCCGGCGATCAATCCACCGCCGTCCGCCGCCTGTTTCTCCCACCCTCCTCTTCTCCTCTTCAAACTGTTAACAGAAAAATACTTTAACCCCAAGATCAAAATTCCCGAAATCTATTCTCCCTTCCCCGGCGAAAGCTTCGCCGCCTTCCAGCTCACGGTA...

CDS

5 records

下载 CDS FASTA

LOC131011826
ATGAATCTCCATGAACAAGGAAATGAAACACCATTTGATCTTGGAGGAACTGAAGCATTTAGCAGTGGTGTAACTGAACCAATTAACAGAATGCAATTTATAATCGACGGGGTGAGAGAGCAACACGAATCACCTAGGAACGCATGGGTGCTTTGTGATGAGTGCCAAAAGTGGCGGCGGATACAAGCGGCACTTGCTGATCAAATTGAAGAAACGAACTGTGGATGGACTTGCAAAGATAACACTGATAAAGACTTTGC...

Protein

5 records

下载 Protein FASTA

XP_057795668.1
MNLHEQGNMFTDTTFGEDICGIKDEPFMIDFDLDIGKLSVSPRPYQSSSVAALSMVESEVLGSDLLSAFDSICVHESLEQKDCVAPDINANSFDSVGQAYLSTQCPADGNDTKDLGSSDLAVVAEPSVQGDGEANKALVGGIDKTCTQSHSLIVYTSSHRRSARNTKSSQMNESPNSSKCRMLVNKSPEFDPSSLPIIRRSRSLSANRARSSVWGDLGNILPDIDQSSVVEKCLGNERKPRRQKGGKGKMKGIRDQIGKK...

XP_057795669.1
MNLHEQGNMFTDTTFGEDICGIKDEPFMIDFDLDIGKLSVSPRPYQSSSVAALSMVESEVLGSDLLSAFDSICVHESLEQKDCVAPDINANSFDSVGQAYLSTQCPADGNDTKDLGSSDLAVVAEPSVQGDGEANKALVGGIDKTCTQSHSLIVYTSSHRRSARNTKSSQMNESPNSSKCRMLVNKSPEFDPSSLPIIRRSRSLSANRARSSVWGDLGNILPDIDQSSVVEKCLGNERKPRRQKGGKGKMKGIRDQIGKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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