Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002798`

染色体: Chr02 坐标: 48077042-48079452 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002798`
名称	SmilChr02G002798
描述	pentatricopeptide repeat-containing protein At3g02650, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48077042 - 48079452 / `-`

ID 对照

NCBI Gene ID	`LOC131011829`
GeneID	`131011829`
locus_tag	`-`
NCBI Name	`LOC131011829`
原始查询	`SmilChr02G002798`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g02650, mitochondrial
产物	pentatricopeptide repeat-containing protein At3g02650%2C mitochondrial
Arabidopsis	`AT3G02650` (AT3G02650) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821285] identity=42.8; qcov=0.984; evalue=1.5e-150; confidence=medium
Rice	`Os01g0897500` (ppr564) - identity=55.7; qcov=0.158; evalue=9.63e-33; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131011829

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057795679.1`
2	Chloroplast	叶绿体	0.20000	`XP_057795679.1`
3	Nucleus	细胞核	0.00000	`XP_057795679.1`
4	Chromosome	染色体	0.00000	`XP_057795679.1`
5	Centromere	着丝粒	0.00000	`XP_057795679.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48077461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B21,B51
`Chr2:48077671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B13,C8
`Chr2:48077863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:48077950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr2:48078234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B20,C53,C6
`Chr2:48078297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:48078562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:48078712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C7
`Chr2:48079059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B135,B54,B80,C44,D7
`Chr2:48079258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795679.1

613 aa

306

613

PPR

PPR_2

PPR_long

PPR

TPR_24

PPR_3

PPR_1

PPR

PPR_2

TPR_24

PPR_1

PPR

PPR_3

PPR_2

PF01535 PPR 259-284 aa PF01535 PPR 413-440 aa PF13041 PPR_2 445-492 aa PF17177 PPR_long 446-585 aa PF01535 PPR 447-476 aa PF23276 TPR_24 448-513 aa PF13812 PPR_3 470-510 aa PF12854 PPR_1 474-505 aa PF01535 PPR 481-509 aa PF13041 PPR_2 486-527 aa PF23276 TPR_24 501-601 aa PF12854 PPR_1 513-542 aa PF01535 PPR 516-546 aa PF13812 PPR_3 516-558 aa PF13041 PPR_2 516-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795679.1`	Pfam	`PF01535`	PPR	Repeat	259	284	2.3e-31	106.5	PPR repeat
`XP_057795679.1`	Pfam	`PF01535`	PPR	Repeat	413	440	2.3e-31	106.5	PPR repeat
`XP_057795679.1`	Pfam	`PF13041`	PPR_2	Repeat	445	492	1.9e-41	140.6	PPR repeat family
`XP_057795679.1`	Pfam	`PF17177`	PPR_long	Repeat	446	585	1.3e-10	41.8	Pentacotripeptide-repeat region of PRORP
`XP_057795679.1`	Pfam	`PF01535`	PPR	Repeat	447	476	2.3e-31	106.5	PPR repeat
`XP_057795679.1`	Pfam	`PF23276`	TPR_24	Repeat	448	513	6e-19	69.0	Pentatricopeptide repeat-containing protein
`XP_057795679.1`	Pfam	`PF13812`	PPR_3	Repeat	470	510	8.3e-17	61.7	Pentatricopeptide repeat domain
`XP_057795679.1`	Pfam	`PF12854`	PPR_1	Repeat	474	505	6.7e-26	90.4	PPR repeat
`XP_057795679.1`	Pfam	`PF01535`	PPR	Repeat	481	509	2.3e-31	106.5	PPR repeat
`XP_057795679.1`	Pfam	`PF13041`	PPR_2	Repeat	486	527	1.9e-41	140.6	PPR repeat family
`XP_057795679.1`	Pfam	`PF23276`	TPR_24	Repeat	501	601	6e-19	69.0	Pentatricopeptide repeat-containing protein
`XP_057795679.1`	Pfam	`PF12854`	PPR_1	Repeat	513	542	6.7e-26	90.4	PPR repeat
`XP_057795679.1`	Pfam	`PF01535`	PPR	Repeat	516	546	2.3e-31	106.5	PPR repeat
`XP_057795679.1`	Pfam	`PF13812`	PPR_3	Repeat	516	558	8.3e-17	61.7	Pentatricopeptide repeat domain
`XP_057795679.1`	Pfam	`PF13041`	PPR_2	Repeat	516	561	1.9e-41	140.6	PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939696.1
AAAACAAACAAATCATTTAAAACTTTCAATTTTTAGAAATGAAAAGGTTCCATTTTATTTCAAGAATTTATATAATCTACTAGTAATTCCCAATTAAAAATTTCTGAGAAAGCGCAACAAAACCCTCTGTCGCCACCAGATTTAGGGTTTTCGGCCACCATTTTCACTGAGCTTCGCAGACACAGTATGTGGAGGCCATTAGCAAGAAGGGCTTTGCTATACCGGCGTACGTCGCTGCCGCGGAAGCTGCATCTCCCCGT...

CDS

1 records

下载 CDS FASTA

LOC131011829
ATGTGGAGGCCATTAGCAAGAAGGGCTTTGCTATACCGGCGTACGTCGCTGCCGCGGAAGCTGCATCTCCCCGTCAATCTTCAGGTAGCAAACCGACCACCACCACTAACTCATGAATCCGCATCTCGACTTTCGTTTTTCTCGAGCACGTATCATTTCCATCAGAACCCTAGATTTTTCTCGTCGGATTCAGCTGAGATTCGCGATGACCTGCCCCCTGAGCCGCTGATTTCGGAGGATAATGAAACCACTGGTGGTTT...

Protein

1 records

下载 Protein FASTA

XP_057795679.1
MWRPLARRALLYRRTSLPRKLHLPVNLQVANRPPPLTHESASRLSFFSSTYHFHQNPRFFSSDSAEIRDDLPPEPLISEDNETTGGFDFSGLNESGGFEDEDSIFDGATETPDVNHGFGELFGESVAFGENMDSAEEGVGLVEENDAENVESLLSLLQSSDVVHGSIIPHLERMNLTLDNDLVMKVLQTPCVSGENLIGFLRWVLKKWRFKLTSEVLNELVRSICTRNRRREVYALWDLINEVAEKEKGVVSSECLNEVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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