当前解析结果
SmilChr02G002804| 统一新 Gene ID | SmilChr02G002804 |
|---|---|
| 名称 | SmilChr02G002804 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48113980 - 48115436 / + |
| NCBI Gene ID | LOC131009640 |
|---|---|
| GeneID | 131009640 |
| locus_tag | - |
| NCBI Name | LOC131009640 |
| 原始查询 | SmilChr02G002804 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=34.5; qcov=0.895; evalue=1.71e-46; confidence=low |
| Rice | Os01g0852650- identity=38.3; qcov=0.96; evalue=4.45e-61; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009640 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793035.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057793035.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793035.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793035.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793035.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48113987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B35 |
Chr2:48114001 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | B133,B29,B42,C14,C20 |
Chr2:48114001 |
AG |
A |
1bp_deletion | CDS_variant | 5 | B133,B29,B42,C14,C20 |
Chr2:48114005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B83,C10,C82,D4 |
Chr2:48114009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C8 |
Chr2:48114013 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | A20,B84,C71 |
Chr2:48114013 |
GA |
G |
1bp_deletion | CDS_variant | 3 | A20,B84,C71 |
Chr2:48114024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:48114028 |
AC |
A |
1bp_deletion | frameshift_variant | 11 | A1,A20,A24,B112,B13,B140,B17,B61,C20,C61,C7 |
Chr2:48114040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:48114048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B23,C46 |
Chr2:48114065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B6,B8,C67,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793035.1PF03101
FAR1 2-82 aa
PF21056
ZSWIM1-3_RNaseH-like 177-259 aa
PF10551
MULE 205-266 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793035.1 |
Pfam | PF03101 |
FAR1 | Domain | 2 | 82 | 8.7e-17 | 62.3 | FAR1 DNA-binding domain |
XP_057793035.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 177 | 259 | 1.8e-06 | 28.6 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057793035.1 |
Pfam | PF10551 |
MULE | Domain | 205 | 266 | 1.3e-15 | 58.3 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。