当前解析结果
SmilChr02G002826| 统一新 Gene ID | SmilChr02G002826 |
|---|---|
| 名称 | SmilChr02G002826 |
| 描述 | beta-galactosidase 16-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48358381 - 48364862 / - |
| NCBI Gene ID | LOC131011853 |
|---|---|
| GeneID | 131011853 |
| locus_tag | - |
| NCBI Name | LOC131011853 |
| 原始查询 | SmilChr02G002826 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 16-like |
| 产物 | beta-galactosidase 16-like |
| Arabidopsis | AT1G77410 (BGAL16)beta-galactosidase 16 [Source:NCBI gene (formerly Entrezgene);Acc:844078] identity=64; qcov=0.998; evalue=0; confidence=high |
| Rice | Os05g0428100 (OsBgal6)- identity=57.3; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011853 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057795711.1 |
| 2 | Secreted | 分泌到胞外 | 0.60000 | XP_057795713.1 |
| 3 | Cell wall | 细胞壁 | 0.60000 | XP_057795711.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795711.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795711.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48358776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr2:48358911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:48359020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:48359097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:48359384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C5,C83 |
Chr2:48359405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B60,C28 |
Chr2:48359425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C5,C83 |
Chr2:48359430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:48359592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,C5,D5,D8 |
Chr2:48360419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr2:48360463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:48360677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795711.1PF01301
Glyco_hydro_35 27-334 aa
PF02449
Glyco_hydro_42 50-180 aa
PF17834
GHD 357-413 aa
PF21467
BetaGal_gal-bd 602-667 aa
PF02140
SUEL_Lectin 719-796 aa
XP_057795712.1PF01301
Glyco_hydro_35 27-84 aa
PF01301
Glyco_hydro_35 84-274 aa
PF17834
GHD 297-353 aa
PF21467
BetaGal_gal-bd 542-607 aa
PF02140
SUEL_Lectin 659-736 aa
XP_057795713.1PF01301
Glyco_hydro_35 6-196 aa
PF17834
GHD 219-275 aa
PF21467
BetaGal_gal-bd 464-529 aa
PF02140
SUEL_Lectin 581-658 aa
XP_057795714.1PF01301
Glyco_hydro_35 27-334 aa
PF02449
Glyco_hydro_42 50-180 aa
PF17834
GHD 357-413 aa
PF21467
BetaGal_gal-bd 602-645 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795711.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 27 | 334 | 1.3e-112 | 377.2 | Glycosyl hydrolases family 35 |
XP_057795711.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 50 | 180 | 1.2e-05 | 25.6 | Beta-galactosidase |
XP_057795711.1 |
Pfam | PF17834 |
GHD | Domain | 357 | 413 | 1e-24 | 86.7 | Beta-sandwich domain in beta galactosidase |
XP_057795711.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 602 | 667 | 3e-26 | 92.1 | Beta-galactosidase, galactose-binding domain |
XP_057795711.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 719 | 796 | 2.1e-19 | 70.4 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057795712.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 27 | 84 | 5.2e-74 | 250.4 | Glycosyl hydrolases family 35 |
XP_057795712.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 84 | 274 | 5.2e-74 | 250.4 | Glycosyl hydrolases family 35 |
XP_057795712.1 |
Pfam | PF17834 |
GHD | Domain | 297 | 353 | 9.1e-25 | 86.9 | Beta-sandwich domain in beta galactosidase |
XP_057795712.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 542 | 607 | 2.4e-26 | 92.3 | Beta-galactosidase, galactose-binding domain |
XP_057795712.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 659 | 736 | 2.4e-19 | 70.2 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057795713.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 6 | 196 | 9.2e-51 | 174.0 | Glycosyl hydrolases family 35 |
XP_057795713.1 |
Pfam | PF17834 |
GHD | Domain | 219 | 275 | 7.9e-25 | 87.1 | Beta-sandwich domain in beta galactosidase |
XP_057795713.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 464 | 529 | 1.6e-26 | 92.9 | Beta-galactosidase, galactose-binding domain |
XP_057795713.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 581 | 658 | 3.7e-19 | 69.6 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057795714.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 27 | 334 | 8.1e-113 | 377.9 | Glycosyl hydrolases family 35 |
XP_057795714.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 50 | 180 | 8.1e-06 | 26.1 | Beta-galactosidase |
XP_057795714.1 |
Pfam | PF17834 |
GHD | Domain | 357 | 413 | 8e-25 | 87.0 | Beta-sandwich domain in beta galactosidase |
XP_057795714.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 602 | 645 | 4.1e-19 | 69.2 | Beta-galactosidase, galactose-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。