Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002839`

染色体: Chr02 坐标: 48514132-48515581 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002839`
名称	SmilChr02G002839
描述	uncharacterized SmilChr02G002839
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48514132 - 48515581 / `+`

ID 对照

NCBI Gene ID	`LOC131011864`
GeneID	`131011864`
locus_tag	`-`
NCBI Name	`LOC131011864`
原始查询	`SmilChr02G002839`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	HSP40/DnaJ peptide-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:841019]; symbol=AT1G44160; hit=AT1G44160; species=arabidopsis; confidence=high
产物	HSP40/DnaJ peptide-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:841019]; symbol=AT1G44160; hit=AT1G44160; species=arabidopsis; confidence=high
Arabidopsis	`AT1G44160` (AT1G44160) HSP40/DnaJ peptide-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:841019] identity=50.6; qcov=0.738; evalue=3.48e-75; confidence=high
Rice	`Os01g0875700` (OsDjB2) - identity=46.1; qcov=0.606; evalue=4.14e-52; confidence=high
GO	GO:0005829 (cytosol); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF01556 (DnaJ_C)
InterPro	-
eggNOG	-
NR	GeneID:131011864

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057795732.1`
2	Cytosol	细胞质基质	0.60000	`XP_057795732.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057795732.1`
4	Nucleus	细胞核	0.00000	`XP_057795732.1`
5	Chromosome	染色体	0.00000	`XP_057795732.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48514333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:48514411`	`C`	`CT`	1bp_insertion	frameshift_variant	2	A5,D9
`Chr2:48514411`	`C`	`CT`	1bp_insertion	CDS_variant	2	A5,D9
`Chr2:48514679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C83
`Chr2:48514799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,C62
`Chr2:48514803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B111,B133,B47,C31,C56
`Chr2:48514820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C83
`Chr2:48514844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B71,B95,C62,C8
`Chr2:48515131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr2:48515142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B131,C86
`Chr2:48515144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B132,B32,C78
`Chr2:48515309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795732.1

340 aa

170

340

DnaJ_C

PF01556 DnaJ_C 164-321 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795732.1`	Pfam	`PF01556`	DnaJ_C	Domain	164	321	2.2e-38	132.4	DnaJ C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939749.1
GAGTGTCGTCCAATAACAATTTGCTTTGTCTCTCCGTGTTAGTCTCTCTCTCACACACACACAAACACACAGATGAGCCTGAGAAAGAGGTTGCGCTCCGTATTAATCTCTTGTCTCATATATCTTTTCTTCTTCTTGTTGGTCTTCTCTCTCTAGCATACCATCCATGGGAGAGCATGCAAGACCAAATCCCAATGATTTGATTCGCTTTCTAGGAATTGCAAACGTCTGCAGGGCATGCAAATCCTTCCTCTCCAAAT...

CDS

1 records

下载 CDS FASTA

LOC131011864
ATGGGAGAGCATGCAAGACCAAATCCCAATGATTTGATTCGCTTTCTAGGAATTGCAAACGTCTGCAGGGCATGCAAATCCTTCCTCTCCAAATGCTACCCAGAGAAGCAACCCTTTTTTTTGAAGAAGCCAGCAAACAAACCCAAACCCAAGCCAATCGAAGATACCAAGATCAGCAGATCAAAGACCAAGAAACATAATGCTGGGAGAGAAGTTGATGACAGACAAGGGAGTGATTACGACGACACCCAAGCAACAAG...

Protein

1 records

下载 Protein FASTA

XP_057795732.1
MGEHARPNPNDLIRFLGIANVCRACKSFLSKCYPEKQPFFLKKPANKPKPKPIEDTKISRSKTKKHNAGREVDDRQGSDYDDTQATRSPHRGSGSSRLSRNLSYHGRSGAATGPLSRSLSHKESTRGAAVGGLTHTFSRSTSRGIAAPIIFSNSSGLIKPAAMEKQLECTLEELCFGCIKKVAIKRDAVKGNGQIVEEDEIVTIKVEPGWRRGTKITFEGKGNQMPGTEAADVVFVIAEKEHSLFKRQEDDLQLGVEIML...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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