当前解析结果
SmilChr02G002849| 统一新 Gene ID | SmilChr02G002849 |
|---|---|
| 名称 | SmilChr02G002849 |
| 描述 | delta-aminolevulinic acid dehydratase, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48668974 - 48673486 / + |
| NCBI Gene ID | LOC131011874 |
|---|---|
| GeneID | 131011874 |
| locus_tag | - |
| NCBI Name | LOC131011874 |
| 原始查询 | SmilChr02G002849 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | delta-aminolevulinic acid dehydratase, chloroplastic-like |
| 产物 | delta-aminolevulinic acid dehydratase%2C chloroplastic-like |
| Arabidopsis | AT1G69740 (HEMB1)Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843310] identity=82.2; qcov=0.993; evalue=0; confidence=high |
| Rice | Os06g0704600 (ALAD)- identity=84.1; qcov=0.849; evalue=0; confidence=high |
| GO | GO:0004655 (porphobilinogen synthase activity); GO:0005829 (cytosol); GO:0006783 (heme biosynthetic process); GO:0008270 (zinc ion binding) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00490 (ALAD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011874 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057795745.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057795745.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795745.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795745.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795745.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48669675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:48669739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:48669827 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B129 |
Chr2:48669827 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B129 |
Chr2:48670896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:48670912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,C43,D9 |
Chr2:48672182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B64,C29,C51,C6 |
Chr2:48673170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:48673188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795745.1PF00490
ALAD 106-423 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795745.1 |
Pfam | PF00490 |
ALAD | Domain | 106 | 423 | 8.4e-133 | 443.1 | Delta-aminolevulinic acid dehydratase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。