当前解析结果
SmilChr02G002852| 统一新 Gene ID | SmilChr02G002852 |
|---|---|
| 名称 | SmilChr02G002852 |
| 描述 | uncharacterized SmilChr02G002852 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48687032 - 48691166 / + |
| NCBI Gene ID | LOC131009649 |
|---|---|
| GeneID | 131009649 |
| locus_tag | - |
| NCBI Name | LOC131009649 |
| 原始查询 | SmilChr02G002852 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=25.6; qcov=0.326; evalue=1.51e-38; confidence=low |
| Rice | Os06g0484800- identity=28.1; qcov=0.615; evalue=9.86e-95; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057793044.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057793044.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057793044.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793044.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793044.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48687043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:48687227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:48687237 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B127,B99,C1 |
Chr2:48687237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B99,C1 |
Chr2:48687253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,C39,D1 |
Chr2:48687257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:48687322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C31,C45,C46,C60,D7 |
Chr2:48687379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C63,C67 |
Chr2:48687415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C73 |
Chr2:48687416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,D1 |
Chr2:48687427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C74,C82 |
Chr2:48687447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793044.1PF03372
Exo_endo_phos 5-220 aa
PF00078
RVT_1 453-714 aa
PF13966
zf-RVT 969-1050 aa
PF13456
RVT_3 1180-1301 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793044.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 5 | 220 | 3.8e-08 | 34.1 | Endonuclease/Exonuclease/phosphatase family |
XP_057793044.1 |
Pfam | PF00078 |
RVT_1 | Domain | 453 | 714 | 1.4e-28 | 100.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057793044.1 |
Pfam | PF13966 |
zf-RVT | Domain | 969 | 1050 | 1.3e-17 | 65.0 | zinc-binding in reverse transcriptase |
XP_057793044.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1180 | 1301 | 4.9e-19 | 69.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。