Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002854`

染色体: Chr02 坐标: 48750182-48753986 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002854`
名称	SmilChr02G002854
描述	filament-like plant protein
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48750182 - 48753986 / `+`

ID 对照

NCBI Gene ID	`LOC131011878`
GeneID	`131011878`
locus_tag	`-`
NCBI Name	`LOC131011878`
原始查询	`SmilChr02G002854`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	filament-like plant protein
产物	filament-like plant protein
Arabidopsis	`AT1G21810` (AT1G21810) filament-like protein (DUF869) [Source:NCBI gene (formerly Entrezgene);Acc:838784] identity=37.9; qcov=1.04; evalue=6.82e-100; confidence=medium
Rice	`Os07g0506600` - identity=44.1; qcov=0.8; evalue=6.85e-103; confidence=medium
GO	-
KEGG	-
Pfam	PF05911 (FPP)
InterPro	-
eggNOG	-
NR	GeneID:131011878

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057795746.1`
2	Cytosol	细胞质基质	0.40000	`XP_057795746.1`
3	Nucleus	细胞核	0.00000	`XP_057795746.1`
4	Chromosome	染色体	0.00000	`XP_057795746.1`
5	Centromere	着丝粒	0.00000	`XP_057795746.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48751873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,C74,D9
`Chr2:48751921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,D10
`Chr2:48752010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,D3
`Chr2:48752255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:48752387`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B88
`Chr2:48752387`	`GA`	`G`	1bp_deletion	CDS_variant	1	B88
`Chr2:48752647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,D4
`Chr2:48752700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr2:48752953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,D4
`Chr2:48753011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:48753013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C30
`Chr2:48753104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795746.1

640 aa

320

640

FPP

PF05911 FPP 85-196 aa PF05911 FPP 204-272 aa PF05911 FPP 319-384 aa PF05911 FPP 395-551 aa

XP_057795747.1

640 aa

320

640

FPP

PF05911 FPP 85-196 aa PF05911 FPP 204-272 aa PF05911 FPP 319-384 aa PF05911 FPP 395-551 aa

XP_057795748.1

640 aa

320

640

FPP

PF05911 FPP 85-196 aa PF05911 FPP 204-272 aa PF05911 FPP 319-384 aa PF05911 FPP 395-551 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795746.1`	Pfam	`PF05911`	FPP	Coiled-coil	85	196	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795746.1`	Pfam	`PF05911`	FPP	Coiled-coil	204	272	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795746.1`	Pfam	`PF05911`	FPP	Coiled-coil	319	384	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795746.1`	Pfam	`PF05911`	FPP	Coiled-coil	395	551	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795747.1`	Pfam	`PF05911`	FPP	Coiled-coil	85	196	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795747.1`	Pfam	`PF05911`	FPP	Coiled-coil	204	272	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795747.1`	Pfam	`PF05911`	FPP	Coiled-coil	319	384	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795747.1`	Pfam	`PF05911`	FPP	Coiled-coil	395	551	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795748.1`	Pfam	`PF05911`	FPP	Coiled-coil	85	196	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795748.1`	Pfam	`PF05911`	FPP	Coiled-coil	204	272	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795748.1`	Pfam	`PF05911`	FPP	Coiled-coil	319	384	4.3e-79	267.5	Filament-like plant protein, long coiled-coil
`XP_057795748.1`	Pfam	`PF05911`	FPP	Coiled-coil	395	551	4.3e-79	267.5	Filament-like plant protein, long coiled-coil

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939763.1
TGTATATTTTTGGAGAAGCTGGATAATAGTAATAGTGATCTTAGCAGCACATGCTCTGGTCCTTGACGATTTGAGAAAAATTAACTGTAATTTTGAATTTAAGAAAGGGACTTATTATCTGTTAATAGCTTACAAGAAAATGGGTGCGTGGCTTGGAATCTCAAGTTATTACTGCTGATTATCTTCAGATCTTTTTCAAGATTCAATTTTTTCGCTGAGATGAATGTGAACCCAGAAAAAGATACTGATTTTTGATGTGT...

XM_057939764.1
GAAGCTGGATAATAGTAATAGTGATCTTAGCAGCACATGCTCTGGTCCTTGACGATTTGAGAAAAATTAACTGTAATTTTGAATTTAAGAAAGGGACTTATTATCTGTTAATAGCTTACAAGAAAATGGGTGCGTGGCTTGGAATCTCAAGTTATTACTGCTGATTATCTTCAGATCTTTTTCAAGATTCAATTTTTTCGCTGAGATGAATGTGAACCCAGAAAAAGATACTGATTTTTGATGTGTGGAATTTGGGTTTT...

CDS

3 records

下载 CDS FASTA

LOC131011878
ATGGAAAAGAAGAAATGGCTGTGGAAGAGAAAATCTTCTGAGAGGAGCCCTGGTGAAAGTGAAAGCTCAGGATCATTTTCTTCTCCTTCTGAGAGATACTCGGACGAACAGGATGCATCGAGAGAATCTCCAAATGGTAGCGTACAGTCGCCAGAAATAACGTCTAAACTCTCATTTACTGACGACGAAGTGAAAGAAAACATGAAGAGGCTGACGGAGAAGTTATCAGCTGCTCTTGTGAATGTCAGTGCTAAAGAAGA...

Protein

3 records

下载 Protein FASTA

XP_057795746.1
MEKKKWLWKRKSSERSPGESESSGSFSSPSERYSDEQDASRESPNGSVQSPEITSKLSFTDDEVKENMKRLTEKLSAALVNVSAKEELVKQHAKVAEEAVAGWEKAENEVSALKQQLEIALQQNVNLEVRVSHLDGALKECVRQLRQGRDEQEKRISDAIAEGNREWESRKVELEKQIVHLQARTEAKESENSSVNNPKSLLVLESVEKENLFLKQEMKARCKELESVIIERDLSIQAAETASKLQLESIKKVAKLEAEC...

XP_057795747.1
MEKKKWLWKRKSSERSPGESESSGSFSSPSERYSDEQDASRESPNGSVQSPEITSKLSFTDDEVKENMKRLTEKLSAALVNVSAKEELVKQHAKVAEEAVAGWEKAENEVSALKQQLEIALQQNVNLEVRVSHLDGALKECVRQLRQGRDEQEKRISDAIAEGNREWESRKVELEKQIVHLQARTEAKESENSSVNNPKSLLVLESVEKENLFLKQEMKARCKELESVIIERDLSIQAAETASKLQLESIKKVAKLEAEC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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