Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002865`

染色体: Chr02 坐标: 48813301-48816946 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002865`
名称	SmilChr02G002865
描述	mediator of RNA polymerase II transcription subunit 19a-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48813301 - 48816946 / `-`

ID 对照

NCBI Gene ID	`LOC131011890`
GeneID	`131011890`
locus_tag	`-`
NCBI Name	`LOC131011890`
原始查询	`SmilChr02G002865`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	mediator of RNA polymerase II transcription subunit 19a-like
产物	mediator of RNA polymerase II transcription subunit 19a-like
Arabidopsis	`AT5G12230` (MED19A) mediator of RNA polymerase II transcription subunit 19a-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831097] identity=63.2; qcov=0.594; evalue=5.16e-44; confidence=medium
Rice	`Os12g0614000` (OsMED19a) - identity=65; qcov=0.594; evalue=3.4e-51; confidence=medium
GO	GO:0003712 (transcription coregulator activity); GO:0008134 (transcription factor binding); GO:0016592 (mediator complex); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131011890

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795767.1`
2	Nucleoplasm	核质	0.80000	`XP_057795768.1`
3	Nuclear body	核内小体	0.20000	`XP_057795768.1`
4	Chromosome	染色体	0.00000	`XP_057795767.1`
5	Centromere	着丝粒	0.00000	`XP_057795767.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48813889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:48813897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B104,B78,C34
`Chr2:48814492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,C34
`Chr2:48814512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C27,C8
`Chr2:48814513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B104,B78,C34

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939784.1
TATTTATTTTTTGTTAAAGAGAGCTTGTCTTTAGCATAATAAAAAGGAAAAAAAAAAGAAAAAGAGAACTTGTCTTTTACATTTATTTTCTTGTGCCACAAACTCACAATTTTTTTGGCGTATTCAGATCCAAGAATAGCACCAAATTGTTTGGAAAGTTTTTTCTCAAACCATCTTTTGCTTCCAAAAACCTAAAATCGATATTAGGAATAAGTGAGAGTATTTGATTGGGCGGAATCGAATTCATCGAAAACAAGTAC...

XM_057939785.1
ATTTTTTGTTAAAGAGAGCTTGTCTTTAGCATAATAAAAAGGAAAAAAAAAAGAAAAAGAGAACTTGTCTTTTACATTTATTTTCTTGTGCCACAAACTCACAATTTTTTTGGCGTATTCAGATCCAAGAATAGCACCAAATTGTTTGGAAAGTTTTTTCTCAAACCATCTTTTGCTTCCAAAAACCTAAAATCGATATTAGGAATAAGTGAGAGTATTTGATTGGGCGGAATCGAATTCATCGAAAACAAGTACAGAAA...

CDS

3 records

下载 CDS FASTA

LOC131011890
ATGTTGAAAATTTTGAGGAATTTATTGGTTGGATATGTATTTTGGCAGTTTGGAGGTAGGCTCTACTGTGAAACAAACAAGGGGCTAGTGCTCTTGTTCCTCCCAGCTGATAAAATGGATGGTACTATCAATAGGTTTGGAAAAGGGCCAAGAGAACTTACAGGTGCTCGAGATCTTATAAGTCACTTCAAGTTGTTACCTCATCACGACTTTTTCTGCAAGAATTCACGTCCTGTGTCAGTTCTGGACACGCACTACCT...

LOC131011890
ATGGATGGTACTATCAATAGGTTTGGAAAAGGGCCAAGAGAACTTACAGGTGCTCGAGATCTTATAAGTCACTTCAAGTTGTTACCTCATCACGACTTTTTCTGCAAGAATTCACGTCCTGTGTCAGTTCTGGACACGCACTACCTCTCCAACGTGGTTGGTGACACAGAGATCAGGAAAGGGGAAGGGATGCAATTGGATCAGCTTGTTCAGACTACATTATCAAGAGAGAATTCTGCATGTATAAAGCCATTTAACTT...

Protein

3 records

下载 Protein FASTA

XP_057795767.1
MLKILRNLLVGYVFWQFGGRLYCETNKGLVLLFLPADKMDGTINRFGKGPRELTGARDLISHFKLLPHHDFFCKNSRPVSVLDTHYLSNVVGDTEIRKGEGMQLDQLVQTTLSRENSACIKPFNLDVLGEAFHLQESASVNLSPAEMGIPTIAVKSKSASIAKDKHKKHKDKHKEKDKERKKHRKSKEEKEKKRDKHDKRKKREGDDDTSGVKKHKKSKHKSSKIDEVGTRRFPA

XP_057795768.1
MLKILRNLLVGYVFWQFGGRLYCETNKGLVLLFLPADKMDGTINRFGKGPRELTGARDLISHFKLLPHHDFFCKNSRPVSVLDTHYLSNVVGDTEIRKGEGMQLDQLVQTTLSRENSACIKPFNLDVLGEAFHLQESASVNLSPAEMGIPTIAVKSKSASIAKDKHKKHKDKHKEKDKERKKHRKSKEEKEKKRDKHDKRKKREGDDDTSGVKKHKKT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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