Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002866`

染色体: Chr02 坐标: 48820365-48825538 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002866`
名称	SmilChr02G002866
描述	uncharacterized SmilChr02G002866
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	48820365 - 48825538 / `-`

ID 对照

NCBI Gene ID	`LOC131011892`
GeneID	`131011892`
locus_tag	`-`
NCBI Name	`LOC131011892`
原始查询	`SmilChr02G002866`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826386]; symbol=TPR8; hit=AT4G08320; species=arabidopsis; confidence=high
产物	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826386]; symbol=TPR8; hit=AT4G08320; species=arabidopsis; confidence=high
Arabidopsis	`AT4G08320` (TPR8) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826386] identity=47.5; qcov=0.701; evalue=4.6e-60; confidence=high
Rice	`Os04g0690300` - identity=31.8; qcov=0.748; evalue=4.56e-26; confidence=low
GO	GO:0005515 (protein binding); GO:0006620 (post-translational protein targeting to endoplasmic reticulum membrane); GO:0016020 (membrane); GO:0030433 (GO:0030433); GO:0060090 (molecular adaptor activity); GO:0072380 (TRC complex)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF07719 (TPR_2); PF13431 (TPR_17); PF16546 (SGTA_dimer)
InterPro	-
eggNOG	-
NR	GeneID:131011892

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795770.1`
2	Cytosol	细胞质基质	1.00000	`XP_057795770.1`
3	Nucleus	细胞核	0.40000	`XP_057795771.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057795770.1`
5	Mitochondrion	线粒体	0.20000	`XP_057795771.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:48821329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr2:48821349`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:48821351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:48821952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B108,B5
`Chr2:48823039`	`GT`	`G`	1bp_deletion	frameshift_variant	6	A6,B42,B43,B70,B77,C57
`Chr2:48823075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795770.1

426 aa

213

426

SGTA_dimer

TPR_17

TPR_2

PF16546 SGTA_dimer 13-68 aa PF13431 TPR_17 231-262 aa PF07719 TPR_2 243-276 aa

XP_057795771.1

345 aa

172

345

TPR_17

TPR_2

PF13431 TPR_17 150-181 aa PF07719 TPR_2 162-195 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795770.1`	Pfam	`PF16546`	SGTA_dimer	Domain	13	68	2e-06	28.2	Homodimerisation domain of SGTA
`XP_057795770.1`	Pfam	`PF13431`	TPR_17	Repeat	231	262	3e-10	40.2	Tetratricopeptide repeat
`XP_057795770.1`	Pfam	`PF07719`	TPR_2	Repeat	243	276	6.3e-11	42.2	Tetratricopeptide repeat
`XP_057795771.1`	Pfam	`PF13431`	TPR_17	Repeat	150	181	7.9e-08	32.7	Tetratricopeptide repeat
`XP_057795771.1`	Pfam	`PF07719`	TPR_2	Repeat	162	195	7.6e-08	32.6	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939787.1
TAAAAATATAAATATAAATAAAGTTTATTATTATTGCGCGAAGGTTTGCACCGTCCATCAATGGCGAATCTGAAAACCGATTCCCCCCTCTCCACCCGCATCGCCCGTTCTTTCCTTCACTTCCTCAGCTCCGTTGAACCGTCGGATGGAGTTGACAGTGAAGCGCTTGAAGTTGCAAAGGAATGCTTGGCGGAGGTTTTTAAGATTGATCAGTCTTCAATTGGTAGTCAGTCGAAAATCGACTCGCTAGTCGACATTTT...

XM_057939788.1
GTTGAACCGTCGGATGGAGTTGACAGTGAAGCGCTTGAAGTTGCAAAGGAATGCTTGGCGGAGGTTTTTAAGATTGATCAGTCTTCAATTGGTAGTCAGTCGAAAATCGACTCGCTAGTCGACATTTTCAGTTCTAGAGAAGAATCTGAGAGGCGTTTCGGTAACAATGGTGATTCTGAGGCGCCGACTTTGTCTAGTGGGAAGAATTCTGGAGTTTCAGTGGCACCACAATCATCGGATAAGGACAGGACAAGGGAGCC...

CDS

2 records

下载 CDS FASTA

LOC131011892
ATGGCGAATCTGAAAACCGATTCCCCCCTCTCCACCCGCATCGCCCGTTCTTTCCTTCACTTCCTCAGCTCCGTTGAACCGTCGGATGGAGTTGACAGTGAAGCGCTTGAAGTTGCAAAGGAATGCTTGGCGGAGGTTTTTAAGATTGATCAGTCTTCAATTGGTAGTCAGTCGAAAATCGACTCGCTAGTCGACATTTTCAGTTCTAGAGAAGAATCTGAGAGGCGTTTCGGTAACAATGGTGATTCTGAGGCGCCGAC...

LOC131011892
ATGGTGATTCTGAGGCGCCGACTTTGTCTAGTGGGAAGAATTCTGGAGTTTCAGTGGCACCACAATCATCGGATAAGGACAGGACAAGGGAGCCACATTCACTTGGAAAAGATGAACTTTTTGGGCAGTTCTTTGGTGCTCTTGAAAAGCTCCACTATTTCAGAAGAATGCCTGATGGGAATGATGATCAGATCCAGCTTGACAGAGCAACATATCTATTTCATAATGCTGTGCAGGAAATGCAAACAGCAGGATGTCAA...

Protein

2 records

下载 Protein FASTA

XP_057795770.1
MANLKTDSPLSTRIARSFLHFLSSVEPSDGVDSEALEVAKECLAEVFKIDQSSIGSQSKIDSLVDIFSSREESERRFGNNGDSEAPTLSSGKNSGVSVAPQSSDKDRTREPHSLGKDELFGQFFGALEKLHYFRRMPDGNDDQIQLDRATYLFHNAVQEMQTAGCQTFDQKMLAETFKTQGNKAMQSKLYTEAVELYTFAIALCDDNAVYYCNRAAAYTQIQLYDEAVQDCLKSMAINPNYSKAYSRLGFAYYAQGKYRD...

XP_057795771.1
MVILRRRLCLVGRILEFQWHHNHRIRTGQGSHIHLEKMNFLGSSLVLLKSSTISEECLMGMMIRSSLTEQHIYFIMLCRKCKQQDVKLLIRKCWQRPLRHKVTRPCSLNSTQKQLNYILLPLLYVMTMLFTTATAAYTQIQLYDEAVQDCLKSMAINPNYSKAYSRLGFAYYAQGKYRDAIDKGFTKALQLDPNNDSVRENIRVAEQKLKDEQHRAGSGQSSTSTSHGQSSHQHEGRPRSSSASAPPPPFSMPFNMNGFP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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