Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002897

染色体: Chr02 坐标: 49243032-49246861 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002897
名称SmilChr02G002897
描述fluoride export protein 1-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向49243032 - 49246861 / -

ID 对照

NCBI Gene IDLOC131011923
GeneID131011923
locus_tag-
NCBI NameLOC131011923
原始查询SmilChr02G002897

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述fluoride export protein 1-like
产物fluoride export protein 1-like
ArabidopsisAT2G41705 (AT2G41705)
camphor resistance CrcB family protein [Source:NCBI gene (formerly Entrezgene);Acc:818769]
identity=56.6; qcov=0.954; evalue=2e-152; confidence=high
RiceOs10g0567000
-
identity=45.2; qcov=0.991; evalue=1.57e-106; confidence=high
GOGO:0016020 (membrane); GO:1903424 (fluoride transmembrane transport); GO:1903425 (fluoride transmembrane transporter activity)
KEGG-
PfamPF02537 (CRCB)
InterPro-
eggNOG-
NRGeneID:131011923

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole membrane 液泡膜 1.00000 XP_057795807.1
2 Cell membrane 细胞膜 0.80000 XP_057795807.1
3 Vacuole 液泡 0.80000 XP_057795807.1
4 Nucleus 细胞核 0.00000 XP_057795807.1
5 Chromosome 染色体 0.00000 XP_057795807.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:49243465 G A EMS_canonical_SNV CDS_variant 1 C42
Chr2:49243489 C T EMS_canonical_SNV CDS_variant 4 A22,B121,B23,D8
Chr2:49243495 G A EMS_canonical_SNV CDS_variant 4 A22,B121,B23,D8
Chr2:49243564 C T EMS_canonical_SNV CDS_variant 1 B35
Chr2:49243674 C T EMS_canonical_SNV CDS_variant 5 A4,B63,B81,B83,C76
Chr2:49243746 C T EMS_canonical_SNV CDS_variant 1 B74
Chr2:49243762 G A EMS_canonical_SNV CDS_variant 3 B18,B61,B98
Chr2:49243888 G A EMS_canonical_SNV CDS_variant 5 A4,B63,B81,B83,C76
Chr2:49244172 G A EMS_canonical_SNV CDS_variant 3 A5,D8,D9
Chr2:49244223 C T EMS_canonical_SNV CDS_variant 1 C85
Chr2:49244245 GT G 1bp_deletion frameshift_variant 1 C24
Chr2:49244245 GT G 1bp_deletion CDS_variant 1 C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795807.1
457 aa
N
1
228
457
CRCB
CRCB
C
PF02537 CRCB 144-260 aa PF02537 CRCB 329-442 aa
XP_057795808.1
457 aa
N
1
228
457
CRCB
CRCB
C
PF02537 CRCB 144-260 aa PF02537 CRCB 329-442 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795807.1 Pfam PF02537 CRCB Family 144 260 3e-34 118.1 CrcB-like protein, Camphor Resistance (CrcB)
XP_057795807.1 Pfam PF02537 CRCB Family 329 442 3e-34 118.1 CrcB-like protein, Camphor Resistance (CrcB)
XP_057795808.1 Pfam PF02537 CRCB Family 144 260 3e-34 118.1 CrcB-like protein, Camphor Resistance (CrcB)
XP_057795808.1 Pfam PF02537 CRCB Family 329 442 3e-34 118.1 CrcB-like protein, Camphor Resistance (CrcB)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057939825.1
TCCTTTGCCATTAATAAACTCATATCGTCAACTCTCTCTCTCTCTCTCTCAATTAATGTGTGAGTAAATCTAAAACGTCAAACTCTCGAGGCATGGCATATACCATTTTAATCATAAAAAAAGAAAAAGCACACACCATTTATGAGGGGAGCAGTTGCCATCGCATTTCAGCGCTATTCTTTCACACAATCTTGATTTCCCAAATTCAGGGTGAATACCCCATGCTCTTCTCTCTCCAGATTCTTTGTCTATTGCAACGC...
XM_057939824.1
CTTTGCCATTAATAAACTCATATCGTCAACTCTCTCTCTCTCTCTCTCAATTAATGTGTGAGTAAATCTAAAACGTCAAACTCTCGAGGCATGGCATATACCATTTTAATCATAAAAAAAGAAAAAGCACACACCATTTATGAGGGGAGCAGTTGCCATCGCATTTCAGCGCTATTCTTTCACACAATCTTGATTTCCCAAATTCAGGGTGAATACCCCATGCTCTTCTCTCTCCAGATTCTTTGTCTATTGCAACGCAC...

CDS

2 records

下载 CDS FASTA
LOC131011923
ATGGATCATCAGAATCCAGAACTGGAATCTAGACGGAGTGATTCCTTTGGTAGGCTAAGTGTTGCGAGTTCTTCAAGAAGGTGCTCTTTGAGTACATCATTTTCTTTGGCACGACACTCTGATGATGCGATTGAGAGTGAGTCTGTCTCGGAGGCAGGGGATATTGGTGATAGGGCACTCCACAGCAACAGAGTCAGTGCAAGTGGCCGGAGTCACTTCTCCTTGGAGAATTTGGCAGAGAATGGCGCTGTCGTTCCAGT...
LOC131011923
ATGGATCATCAGAATCCAGAACTGGAATCTAGACGGAGTGATTCCTTTGGTAGGCTAAGTGTTGCGAGTTCTTCAAGAAGGTGCTCTTTGAGTACATCATTTTCTTTGGCACGACACTCTGATGATGCGATTGAGAGTGAGTCTGTCTCGGAGGCAGGGGATATTGGTGATAGGGCACTCCACAGCAACAGAGTCAGTGCAAGTGGCCGGAGTCACTTCTCCTTGGAGAATTTGGCAGAGAATGGCGCTGTCGTTCCAGT...

Protein

2 records

下载 Protein FASTA
XP_057795807.1
MDHQNPELESRRSDSFGRLSVASSSRRCSLSTSFSLARHSDDAIESESVSEAGDIGDRALHSNRVSASGRSHFSLENLAENGAVVPVQDDNLLEPYSDAAFPVAPDLENISPLSADAMVEHGEKKIDENEIPWLLEYVTCLLSLAVFGILGILVRYGLQKLFGPSVIGATSDRSYMYPDLPSNMVGSFLMGWFGVVFKGEIMKVSDQLAIGLTTGFLGSLTTFSGWNQKMLDLSVDGRWVFAFLGIFLGLFLVAYSIIFG...
XP_057795808.1
MDHQNPELESRRSDSFGRLSVASSSRRCSLSTSFSLARHSDDAIESESVSEAGDIGDRALHSNRVSASGRSHFSLENLAENGAVVPVQDDNLLEPYSDAAFPVAPDLENISPLSADAMVEHGEKKIDENEIPWLLEYVTCLLSLAVFGILGILVRYGLQKLFGPSVIGATSDRSYMYPDLPSNMVGSFLMGWFGVVFKGEIMKVSDQLAIGLTTGFLGSLTTFSGWNQKMLDLSVDGRWVFAFLGIFLGLFLVAYSIIFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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