当前解析结果
SmilChr02G002911| 统一新 Gene ID | SmilChr02G002911 |
|---|---|
| 名称 | SmilChr02G002911 |
| 描述 | uncharacterized SmilChr02G002911 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 49411517 - 49415442 / + |
| NCBI Gene ID | LOC131009656 |
|---|---|
| GeneID | 131009656 |
| locus_tag | - |
| NCBI Name | LOC131009656 |
| 原始查询 | SmilChr02G002911 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=low |
| 产物 | hit=Os12g0142900; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=36.5; qcov=0.111; evalue=4.49e-17; confidence=weak |
| Rice | Os12g0142900- identity=30.4; qcov=0.321; evalue=7.41e-63; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009656 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057793051.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057793051.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793051.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793051.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793051.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:49411526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B3,C83,D11 |
Chr2:49411533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C85,D7 |
Chr2:49411542 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B130,B54 |
Chr2:49411542 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B130,B54 |
Chr2:49411595 |
GA |
G |
1bp_deletion | frameshift_variant | 7 | A25,B1,B102,B140,B44,C12,C17 |
Chr2:49411610 |
C |
T |
EMS_canonical_SNV | stop_gained | 42 | A2,A22,A5,A8,B100,B105,B109,B111,B112,B123,B128,B14,B2,B22,B26,B3,B30,B34,B35,B38,B42,B46,B47,B64,B69,B74,B76,B97,C16,C28,C3,C4,C47,C5,C65,C66,C69,C75,C84,C86,D2,D7 |
Chr2:49411611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B11,B66,C44,C55 |
Chr2:49411624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B2,B88,C5,D7 |
Chr2:49411631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B27,C25 |
Chr2:49411643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B11,B66,C55 |
Chr2:49411651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B27,C25 |
Chr2:49411652 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B103,B20,B53,C3,C43,C5,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793051.1PF00078
RVT_1 356-516 aa
PF17919
RT_RNaseH_2 579-676 aa
PF17917
RT_RNaseH 607-708 aa
PF00075
RNase_H 757-879 aa
PF13456
RVT_3 760-879 aa
PF00665
rve 1018-1113 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793051.1 |
Pfam | PF00078 |
RVT_1 | Domain | 356 | 516 | 8.8e-35 | 121.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057793051.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 579 | 676 | 1.2e-21 | 77.4 | RNase H-like domain found in reverse transcriptase |
XP_057793051.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 607 | 708 | 7.5e-23 | 81.4 | RNase H-like domain found in reverse transcriptase |
XP_057793051.1 |
Pfam | PF00075 |
RNase_H | Domain | 757 | 879 | 3.6e-08 | 34.4 | RNase H |
XP_057793051.1 |
Pfam | PF13456 |
RVT_3 | Domain | 760 | 879 | 1.3e-19 | 71.0 | Reverse transcriptase-like |
XP_057793051.1 |
Pfam | PF00665 |
rve | Domain | 1018 | 1113 | 1.2e-12 | 48.7 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。