Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002919`

染色体: Chr02 坐标: 49490647-49497851 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002919`
名称	SmilChr02G002919
描述	uncharacterized SmilChr02G002919
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	49490647 - 49497851 / `+`

ID 对照

NCBI Gene ID	`LOC131009658`
GeneID	`131009658`
locus_tag	`-`
NCBI Name	`LOC131009658`
原始查询	`SmilChr02G002919`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827252]; symbol=AT4G15740; hit=AT4G15740; species=arabidopsis; confidence=weak
产物	Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827252]; symbol=AT4G15740; hit=AT4G15740; species=arabidopsis; confidence=weak
Arabidopsis	`AT4G15740` (AT4G15740) Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:827252] identity=24.8; qcov=0.776; evalue=2.19e-19; confidence=weak
Rice	`Os01g0934100` - identity=36; qcov=0.335; evalue=1.13e-14; confidence=low
GO	GO:0006952 (defense response)
KEGG	-
Pfam	PF00168 (C2)
InterPro	-
eggNOG	-
NR	GeneID:131009658

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057793053.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057793053.1`
3	Vacuole	液泡	0.20000	`XP_057793053.1`
4	Nucleus	细胞核	0.00000	`XP_057793053.1`
5	Chromosome	染色体	0.00000	`XP_057793053.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:49490823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,C6
`Chr2:49491010`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,B71,C53
`Chr2:49491072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr2:49491088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr2:49491142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:49491154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B123,B130,B136,B139
`Chr2:49491172`	`G`	`GC`	1bp_insertion	frameshift_variant	2	C32,C68
`Chr2:49491172`	`G`	`GC`	1bp_insertion	CDS_variant	2	C32,C68
`Chr2:49491270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B47,C29,C41,C56
`Chr2:49491276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,C65
`Chr2:49496783`	`C`	`CTA`	2bp_insertion	frameshift_variant	2	C16,C5
`Chr2:49496783`	`C`	`CTA`	2bp_insertion	CDS_variant	2	C16,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793053.1

415 aa

208

415

PF00168 C2 6-103 aa PF00168 C2 219-321 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793053.1`	Pfam	`PF00168`	C2	Domain	6	103	8.8e-30	103.7	C2 domain
`XP_057793053.1`	Pfam	`PF00168`	C2	Domain	219	321	8.8e-30	103.7	C2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937070.1
ACAAAGTAAACCTAACTATGAATTAAAGATCATGATTGATGGGCATTTCGATCCACAATTCAAAATCTCACCAAAAAAAAATTCCGACATTACAAGCGTTGAATGATGGCGCGAAGAAATCTGACAATAACAGTTGTGTCAGCCCAAGACCTCCCCGACGTCCGACTTCTAGGGAAGATGAAAGTCTACGCCAAGGTTTCAATCGAAGGCGAACCCAAAACCACCATGAAATCCCCCGTTGACTATGAGGGCAAGACGAA...

CDS

1 records

下载 CDS FASTA

LOC131009658
ATGATGGCGCGAAGAAATCTGACAATAACAGTTGTGTCAGCCCAAGACCTCCCCGACGTCCGACTTCTAGGGAAGATGAAAGTCTACGCCAAGGTTTCAATCGAAGGCGAACCCAAAACCACCATGAAATCCCCCGTTGACTATGAGGGCAAGACGAATCCGACGTGGAACTTCGTGGTGGATTACACGGTCCGCGAGTCAACTGTCCGGCGGCATGGAGTCAACGTGGTGGTGCAGCTGTGGTGCAAGAGAACTCTGGG...

Protein

1 records

下载 Protein FASTA

XP_057793053.1
MMARRNLTITVVSAQDLPDVRLLGKMKVYAKVSIEGEPKTTMKSPVDYEGKTNPTWNFVVDYTVRESTVRRHGVNVVVQLWCKRTLGDRFIGDVMIPVRSLYNTGLRSSYKVAGTPEGTLDLMHSFSEGREGLPSAWKTALGCFMLAAAVVLLLGGDSDHDQPKPSRWRRFLLHSLILFLILTTFWMGMKKKTIEENVLFVCIDCYVISTETALMECRKLEITLVSAQHLPDVRTSGRMKVYAKVSLKGESKTTKKSHVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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