Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002934`

染色体: Chr02 坐标: 49833795-49841818 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002934`
名称	SmilChr02G002934
描述	oxysterol-binding protein-related protein 1C-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	49833795 - 49841818 / `-`

ID 对照

NCBI Gene ID	`LOC131011954`
GeneID	`131011954`
locus_tag	`-`
NCBI Name	`LOC131011954`
原始查询	`SmilChr02G002934`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	oxysterol-binding protein-related protein 1C-like
产物	oxysterol-binding protein-related protein 1C-like
Arabidopsis	`AT4G08180` (ORP1C) OSBP(oxysterol binding protein)-related protein 1C [Source:NCBI gene (formerly Entrezgene);Acc:826368] identity=72.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0704700` - identity=76.3; qcov=0.907; evalue=0; confidence=high
GO	GO:0005829 (cytosol); GO:0015248 (GO:0015248); GO:0016020 (membrane); GO:0032934 (sterol binding); GO:0043231 (intracellular membrane-bounded organelle)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00169 (PH); PF01237 (Oxysterol_BP); PF15413 (PH_11)
InterPro	-
eggNOG	-
NR	GeneID:131011954

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057795835.1`
2	Cytosol	细胞质基质	0.60000	`XP_057795835.1`
3	Cell membrane	细胞膜	0.20000	`XP_057795835.1`
4	Nucleus	细胞核	0.00000	`XP_057795835.1`
5	Chromosome	染色体	0.00000	`XP_057795835.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:49834654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B27,C25
`Chr2:49834670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B46,B59,B9,C39,C75
`Chr2:49835273`	`T`	`TCA`	2bp_insertion	frameshift_variant	1	C4
`Chr2:49835273`	`T`	`TCA`	2bp_insertion	CDS_variant	1	C4
`Chr2:49835284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,B98
`Chr2:49835973`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	B11,B111,B126,B21,B33,B54,B95,C11,C43,C44,C57,C64,C66,C69,C81
`Chr2:49836210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr2:49836624`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B89,B91,C50,D6
`Chr2:49836624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B89,B91,C50,D6
`Chr2:49836669`	`A`	`AG`	1bp_insertion	frameshift_variant	45	A16,A21,A3,A9,B1,B115,B118,B12,B120,B125,B126,B13,B135,B138,B19,B2,B30,B31,B33,B37,B42,B55,B58,B62,B7,B70,B72,B83,C23,C24,C26,C3,C35,C4,C42,C45,C5,C53,C57,C58,C64,C81,C86,D10,D3
`Chr2:49837854`	`CTG`	`C`	2bp_deletion	frameshift_variant	19	B105,B11,B111,B126,B21,B30,B54,B76,B95,C11,C43,C44,C57,C64,C66,C67,C69,C71,C81
`Chr2:49837864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B31,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795835.1

805 aa

402

805

PH_11

Oxysterol_BP

PF00169 PH 96-223 aa PF15413 PH_11 100-222 aa PF01237 Oxysterol_BP 430-784 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795835.1`	Pfam	`PF00169`	PH	Domain	96	223	1.7e-11	45.3	PH domain
`XP_057795835.1`	Pfam	`PF15413`	PH_11	Domain	100	222	4.3e-11	43.9	Pleckstrin homology domain
`XP_057795835.1`	Pfam	`PF01237`	Oxysterol_BP	Family	430	784	2e-132	442.3	Oxysterol-binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009097148.1
TTGATTTGACGATGAAGAGATGAAAAACACACATAAAATCCAATTCCACGTTCCTCCAAATTTCTTCACTTCTAACAACAAAGACTGCTTCATCTCACCGGAAAACTCTCCGCGTAGCCCCTAACTTCTCTCCCCAAAATTCAATATCAATCTCTTACTTACACTTCTCCTCTCCTGTATCTCTCTCCACCTCAAAATTCGCTTAACAAAATTTAATTCATTTCATATTCTTTCTTTTCTTTTTTCTCTCCACCAACGAT...

XM_057939852.1
TATATTTTAGTATAGTAGTATTTGATTTGACGATGAAGAGATGAAAAACACACATAAAATCCAATTCCACGTTCCTCCAAATTTCTTCACTTCTAACAACAAAGACTGCTTCATCTCACCGGAAAACTCTCCGCGTAGCCCCTAACTTCTCTCCCCAAAATTCAATATCAATCTCTTACTTACACTTCTCCTCTCCTGTATCTCTCTCCACCTCAAAATTCGCTTAACAAAATTTAATTCATTTCATATTCTTTCTTTTC...

CDS

1 records

下载 CDS FASTA

LOC131011954
ATGCCGAATTCCGCAATGCATCCCTTTTGCTGCGTCTCATCAATGGCGATCACCAACTCCTCCATGCCGGCGGCCGTGCAGTCGTCGCCCGATCCGCTCGCTAGAATTCAGAATTTCGCGGCCATCTCGAGGGCGTCGTCGGCGCGTGACTCAGCCGCCGATCACGGTGGCGGCGCTGTGAGCCTCAGTAATTCCAATAGCAACCATCACAGTTACAATCACGGTCAGAGCCATGTTCATCCCAGCCGCGAATTGAAGAT...

Protein

1 records

下载 Protein FASTA

XP_057795835.1
MPNSAMHPFCCVSSMAITNSSMPAAVQSSPDPLARIQNFAAISRASSARDSAADHGGGAVSLSNSNSNHHSYNHGQSHVHPSRELKINDIVGDGVSGILYKWVNYGRGWRPRWFVLQDGVLSYYKIHGPDKIVVNQETERGSRVIGEESMRRVMRQNHNNRNGTAGSPAKSRTPVGEVHLKVSSIRESRSDDRRFSIFTGTKRLHLRAESREDKLAWMEVLQTMKDMFPRMSNSELMAPVDNLAVSTEKLRLRLLEEGVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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