Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002954`

染色体: Chr02 坐标: 50082047-50087555 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002954`
名称	SmilChr02G002954
描述	chaperone protein dnaJ A7A, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	50082047 - 50087555 / `+`

ID 对照

NCBI Gene ID	`LOC131011968`
GeneID	`131011968`
locus_tag	`-`
NCBI Name	`LOC131011968`
原始查询	`SmilChr02G002954`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein dnaJ A7A, chloroplastic-like
产物	chaperone protein dnaJ A7A%2C chloroplastic-like
Arabidopsis	`AT2G22360` (AT2G22360) DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:816768] identity=72; qcov=1; evalue=0; confidence=high
Rice	`Os05g0333500` (OsDjA7) - identity=72.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009408 (response to heat); GO:0031072 (heat shock protein binding); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085)
KEGG	-
Pfam	PF00226 (DnaJ); PF00684 (DnaJ_CXXCXGXG); PF01556 (DnaJ_C)
InterPro	-
eggNOG	-
NR	GeneID:131011968

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057795855.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057795855.1`
3	Nucleus	细胞核	0.00000	`XP_057795855.1`
4	Chromosome	染色体	0.00000	`XP_057795855.1`
5	Centromere	着丝粒	0.00000	`XP_057795855.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:50082743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B139,B4,B91,B97
`Chr2:50084885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr2:50086128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:50086561`	`TA`	`T`	1bp_deletion	frameshift_variant	1	A7
`Chr2:50086561`	`TA`	`T`	1bp_deletion	CDS_variant	1	A7
`Chr2:50086611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr2:50086856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr2:50086909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B41,B91,C70,D2
`Chr2:50087021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B27,B93,C2,C25
`Chr2:50087042`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,C74
`Chr2:50087060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C74,D3
`Chr2:50087156`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795855.1

442 aa

221

442

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 86-147 aa PF01556 DnaJ_C 200-415 aa PF00684 DnaJ_CXXCXGXG 225-288 aa

XP_057795856.1

442 aa

221

442

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 86-147 aa PF01556 DnaJ_C 200-415 aa PF00684 DnaJ_CXXCXGXG 225-288 aa

XP_057795857.1

442 aa

221

442

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 86-147 aa PF01556 DnaJ_C 200-415 aa PF00684 DnaJ_CXXCXGXG 225-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795855.1`	Pfam	`PF00226`	DnaJ	Domain	86	147	1.6e-27	96.1	DnaJ domain
`XP_057795855.1`	Pfam	`PF01556`	DnaJ_C	Domain	200	415	6e-46	157.0	DnaJ C terminal domain
`XP_057795855.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	225	288	7.3e-15	55.7	DnaJ central domain
`XP_057795856.1`	Pfam	`PF00226`	DnaJ	Domain	86	147	1.6e-27	96.1	DnaJ domain
`XP_057795856.1`	Pfam	`PF01556`	DnaJ_C	Domain	200	415	6e-46	157.0	DnaJ C terminal domain
`XP_057795856.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	225	288	7.3e-15	55.7	DnaJ central domain
`XP_057795857.1`	Pfam	`PF00226`	DnaJ	Domain	86	147	1.6e-27	96.1	DnaJ domain
`XP_057795857.1`	Pfam	`PF01556`	DnaJ_C	Domain	200	415	6e-46	157.0	DnaJ C terminal domain
`XP_057795857.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	225	288	7.3e-15	55.7	DnaJ central domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057939872.1
TTTTGTATAGTTACAACTTACAAGTAAGTTTCTAGAAGTAAAATAGGCCTGTGCAAATTGCAAAGCGCCTTATAGCCTCTCTCTCCCTCTCTGGTTGTCCCCGACCTCTTATTAGCTTCAGGCTCCAATTTCACCACCGGCCACCATTTTTGGACGGTGACTGGATGACAATCATACCTTGTGGAAATACATGGCTGACCCGCTGGGGAGTTCAGCCTCAGTGCATACTAAGACCCTCTACTACCAATAGATTATTGGCA...

XM_057939873.1
AAATTGCAAAGCGCCTTATAGCCTCTCTCTCCCTCTCTGGTTGTCCCCGACCTCTTATTAGCTTCAGGCTCCAATTTCACCACCGGCCACCATTTTTGGACGCTTTGAATATATGCAGGTGACTGGATGACAATCATACCTTGTGGAAATACATGGCTGACCCGCTGGGGAGTTCAGCCTCAGTGCATACTAAGACCCTCTACTACCAATAGATTATTGGCATCCCCGAATTGTACATCAAGCAGGAATAGGTCACTGGC...

CDS

3 records

下载 CDS FASTA

LOC131011968
ATGACAATCATACCTTGTGGAAATACATGGCTGACCCGCTGGGGAGTTCAGCCTCAGTGCATACTAAGACCCTCTACTACCAATAGATTATTGGCATCCCCGAATTGTACATCAAGCAGGAATAGGTCACTGGCAGTGGCATCACAAAGTTCAGCCTTTTATGCTCAAGAATCTTTGAATGCACTTTTCAGTTCAGGGCCATACAATAATCGGTGTCAGAGAAGAGGAACTAGGCTGATTGTTAGAGCTGAGAGAGATTA...

Protein

3 records

下载 Protein FASTA

XP_057795855.1
MTIIPCGNTWLTRWGVQPQCILRPSTTNRLLASPNCTSSRNRSLAVASQSSAFYAQESLNALFSSGPYNNRCQRRGTRLIVRAERDYYSVLGVSKNSSKSEIKSAYRKLARSYHPDVNKEAGAEDKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGAGAGMGDFSNPFDLFESLFEGMGGMGMGGRGSRNRAAEGEDQVYNLVLNFKEAVFGVEKEIEITRLETCSTCDGSGAKPGTKASKCSTCGGQGQVVSSARTPLG...

XP_057795856.1
MTIIPCGNTWLTRWGVQPQCILRPSTTNRLLASPNCTSSRNRSLAVASQSSAFYAQESLNALFSSGPYNNRCQRRGTRLIVRAERDYYSVLGVSKNSSKSEIKSAYRKLARSYHPDVNKEAGAEDKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGAGAGMGDFSNPFDLFESLFEGMGGMGMGGRGSRNRAAEGEDQVYNLVLNFKEAVFGVEKEIEITRLETCSTCDGSGAKPGTKASKCSTCGGQGQVVSSARTPLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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