当前解析结果
SmilChr02G002965| 统一新 Gene ID | SmilChr02G002965 |
|---|---|
| 名称 | SmilChr02G002965 |
| 描述 | fluoride export protein 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 50168092 - 50171839 / + |
| NCBI Gene ID | LOC131011975 |
|---|---|
| GeneID | 131011975 |
| locus_tag | - |
| NCBI Name | LOC131011975 |
| 原始查询 | SmilChr02G002965 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fluoride export protein 1-like |
| 产物 | fluoride export protein 1-like |
| Arabidopsis | AT2G41705 (AT2G41705)camphor resistance CrcB family protein [Source:NCBI gene (formerly Entrezgene);Acc:818769] identity=56.9; qcov=0.954; evalue=5.29e-153; confidence=high |
| Rice | Os10g0567000- identity=49.2; qcov=0.858; evalue=1.38e-106; confidence=high |
| GO | GO:0016020 (membrane); GO:1903424 (fluoride transmembrane transport); GO:1903425 (fluoride transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF02537 (CRCB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011975 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057795863.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057795863.1 |
| 3 | Cell membrane | 细胞膜 | 0.80000 | XP_057795863.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795863.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795863.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:50169833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B58,B89,C4,C59,C83 |
Chr2:50169866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B17,B24 |
Chr2:50169891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,B17 |
Chr2:50170083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:50170519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B84 |
Chr2:50170631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr2:50170674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B16,B55,D11 |
Chr2:50170805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D8,D9 |
Chr2:50171043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C50,C52 |
Chr2:50171125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,D8,D9 |
Chr2:50171277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B117,B131,B9,C67 |
Chr2:50171303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795863.1PF02537
CRCB 144-260 aa
PF02537
CRCB 329-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795863.1 |
Pfam | PF02537 |
CRCB | Family | 144 | 260 | 2.4e-34 | 118.4 | CrcB-like protein, Camphor Resistance (CrcB) |
XP_057795863.1 |
Pfam | PF02537 |
CRCB | Family | 329 | 442 | 2.4e-34 | 118.4 | CrcB-like protein, Camphor Resistance (CrcB) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。