当前解析结果
SmilChr02G002979| 统一新 Gene ID | SmilChr02G002979 |
|---|---|
| 名称 | SmilChr02G002979 |
| 描述 | E3 ubiquitin-protein ligase RZF1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 50363384 - 50364606 / + |
| NCBI Gene ID | LOC131011992 |
|---|---|
| GeneID | 131011992 |
| locus_tag | - |
| NCBI Name | LOC131011992 |
| 原始查询 | SmilChr02G002979 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RZF1-like |
| 产物 | E3 ubiquitin-protein ligase RZF1-like |
| Arabidopsis | AT1G60360 (AT1G60360)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842331] identity=41.4; qcov=1.02; evalue=9.57e-68; confidence=medium |
| Rice | Os03g0351800 (OsRFP)- identity=37.6; qcov=0.818; evalue=9.21e-50; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14369 (Zn_ribbon_19); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795883.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057795883.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057795883.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057795883.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057795883.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:50363473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:50363545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B60 |
Chr2:50363572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:50363610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr2:50363618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B66,C55 |
Chr2:50363624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,B73 |
Chr2:50363989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:50364112 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B10 |
Chr2:50364112 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B10 |
Chr2:50364117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B24 |
Chr2:50364298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr2:50364338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795883.1PF14369
Zn_ribbon_19 16-49 aa
PF12678
zf-rbx1 222-268 aa
PF17123
zf-RING_11 226-254 aa
PF13923
zf-C3HC4_2 226-267 aa
PF13639
zf-RING_2 226-268 aa
PF13445
zf-RING_UBOX 227-257 aa
PF00097
zf-C3HC4 227-267 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795883.1 |
Pfam | PF14369 |
Zn_ribbon_19 | Domain | 16 | 49 | 7.5e-13 | 49.1 | zinc-ribbon |
XP_057795883.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 222 | 268 | 5.9e-08 | 33.5 | RING-H2 zinc finger domain |
XP_057795883.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 226 | 254 | 1.2e-08 | 35.2 | RING-like zinc finger |
XP_057795883.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 226 | 267 | 1.1e-10 | 41.8 | Zinc finger, C3HC4 type (RING finger) |
XP_057795883.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 226 | 268 | 1.7e-13 | 51.3 | Ring finger domain |
XP_057795883.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 227 | 257 | 5.4e-06 | 27.0 | RING-type zinc-finger |
XP_057795883.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 227 | 267 | 1.1e-07 | 32.3 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。